W500-4-7-1 Chr1 24924128 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr1 25887181 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr1 27563410 27563411 0 0 Deletion 1 W500-4-7-1 Chr1 34385784 34385797 0 0 Deletion 13 LOC_Os01g59450 ZOS1-13 - C2H2 zinc finger protein, expressed W500-4-7-1 Chr1 40345283 40345284 0 0 Deletion 1 W500-4-7-1 Chr10 14896721 14896722 0 0 Deletion 1 W500-4-7-1 Chr10 17468158 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr10 3602018 3602035 0 0 Deletion 17 LOC_Os10g06920 expressed protein W500-4-7-1 Chr10 4615341 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr10 7304085 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO W500-4-7-1 Chr11 10354042 G-A 0 0 Single Base Substitution 0 INTRON HOMO W500-4-7-1 Chr11 1190877 1190877 0 0 Insertion 1 W500-4-7-1 Chr11 17624294 T-C 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr11 1844641 A-T 0 0 Single Base Substitution 0 INTRON HOMO W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41320 hypothetical protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41330 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41350 MBTB67 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41360 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41365 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41370 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41380 transposon protein, putative, unclassified, expressed W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41390 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41400 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41410 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41420 expressed protein W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41440 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr11 24761001 24870000 0 0 Deletion 109000 LOC_Os11g41450 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr11 24761113 26213049 0 0 Inversion 1451936 LOC_Os11g43410 Leucine Rich Repeat family protein, expressed W500-4-7-1 Chr11 24869783 26213055 0 0 Inversion 1343272 LOC_Os11g41450 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr11 24869783 26213055 0 0 Inversion 1343272 LOC_Os11g43410 Leucine Rich Repeat family protein, expressed W500-4-7-1 Chr11 5506348 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr12 12115631 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25840 mucin, putative W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25860 O-methyltransferase, putative, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25870 O-methyltransferase, putative, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25880 hypothetical protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25920 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25940 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25950 expressed protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25959 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25968 retrotransposon protein, putative, Ty3-gypsy subclass W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g25990 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26000 retrotransposon protein, putative, Ty3-gypsy subclass W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26010 retrotransposon protein, putative, Ty1-copia subclass, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26020 expressed protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26030 FACT complex subunit SPT16, putative, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26040 expressed protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26044 expressed protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26050 hypothetical protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26060 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26070 transposon protein, putative, CACTA, En/Spm sub-class, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26080 transposon protein, putative, CACTA, En/Spm sub-class, expressed W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26090 expressed protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26100 hypothetical protein W500-4-7-1 Chr12 14988001 15197000 0 0 Deletion 209000 LOC_Os12g26110 transposon protein, putative, CACTA, En/Spm sub-class W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26140 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26160 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26170 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26180 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26204 transposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26220 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26240 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26250 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26270 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26280 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26290 alpha-DOX2, putative, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26300 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26310 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26320 retrotransposon, putative, centromere-specific, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26330 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26350 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26370 retrotransposon protein, putative, Ty1-copia subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26380 dirigent, putative, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26390 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26400 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26410 hypothetical protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26420 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26430 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26444 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26460 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26470 aspartic proteinase nepenthesin-1 precursor, putative, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26480 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26500 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26510 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26520 retrotransposon protein, putative, Ty1-copia subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26530 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26540 retrotransposon protein, putative, Ty1-copia subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26560 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26570 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26580 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26590 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26600 transposon protein, putative, CACTA, En/Spm sub-class W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26620 transposon protein, putative, CACTA, En/Spm sub-class, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26630 transposon protein, putative, CACTA, En/Spm sub-class, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26640 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26650 retrotransposon protein, putative, unclassified W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26660 retrotransposon protein, putative, LINE subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26670 hypothetical protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26680 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26690 expressed protein W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26720 armadillo, putative, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26740 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15202001 15706000 0 0 Deletion 504000 LOC_Os12g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W500-4-7-1 Chr12 15369664 15369664 0 0 Insertion 3 W500-4-7-1 Chr12 21373926 G-T 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr12 3212634 3212794 0 0 Deletion 160 LOC_Os12g06630 OsFBT14 - F-box and tubby domain containing protein, expressed W500-4-7-1 Chr2 14697465 14697465 0 0 Insertion 1 W500-4-7-1 Chr2 22298964 22298968 0 0 Deletion 4 W500-4-7-1 Chr2 28833569 G-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO W500-4-7-1 Chr3 15899406 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr3 30157618 C-T 0 0 Single Base Substitution 0 INTRON HOMO W500-4-7-1 Chr3 6369366 6369378 0 0 Deletion 12 W500-4-7-1 Chr3 6817945 G-T 0 0 Single Base Substitution 0 INTRON HET W500-4-7-1 Chr3 7660437 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr3 8694176 8694178 0 0 Deletion 2 W500-4-7-1 Chr4 10540659 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18970 retrotransposon, putative, centromere-specific W500-4-7-1 Chr4 11297089 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g20240 retrotransposon protein, putative, unclassified, expressed W500-4-7-1 Chr4 13201082 13201088 0 0 Deletion 6 W500-4-7-1 Chr4 16415142 16415142 0 0 Insertion 4 W500-4-7-1 Chr4 31565638 31565652 0 0 Deletion 14 LOC_Os04g53000 NBS-LRR disease resistance protein, putative, expressed W500-4-7-1 Chr4 32627012 32627012 0 0 Insertion 1 LOC_Os04g54850 pectinesterase, putative, expressed W500-4-7-1 Chr4 8641092 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr5 12804950 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr5 13022920 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr5 16631779 16631782 0 0 Deletion 3 W500-4-7-1 Chr5 16654079 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr5 2232947 2232962 0 0 Deletion 15 W500-4-7-1 Chr6 22276392 22276392 0 0 Insertion 1 W500-4-7-1 Chr6 23067885 C-T 0 0 Single Base Substitution 0 INTRON HET W500-4-7-1 Chr6 23175235 23175235 0 0 Insertion 2 W500-4-7-1 Chr6 30100273 G-A 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr7 10508737 G-A 0 0 Single Base Substitution 0 INTRON HOMO W500-4-7-1 Chr7 10809029 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W500-4-7-1 Chr7 14905444 14905445 0 0 Deletion 1 W500-4-7-1 Chr7 8563563 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO W500-4-7-1 Chr8 24492649 24492655 0 0 Deletion 6 LOC_Os08g38730 expressed protein W500-4-7-1 Chr8 4341795 4341799 0 0 Deletion 4 W500-4-7-1 Chr9 1489681 T-A 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr9 14966645 G-T 0 0 Single Base Substitution 0 INTERGENIC HET W500-4-7-1 Chr9 3444135 3444146 0 0 Deletion 11 W500-4-7-1 Chr9 3997712 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g07860 retrotransposon protein, putative, unclassified