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| Mutant Information |
|---|
| Mutant Name | 701-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 701-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10611467 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 39129080 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6745782 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 6745783 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9088493 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 326578 | G-T | Homo | INTRON | |
| SBS | Chr5 | 326579 | A-T | Homo | INTRON | |
| SBS | Chr5 | 12811167 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17884976 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 186929 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 12204692 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 13873552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17948249 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23488897 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27714616 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11084350 | T-C | Homo | INTRON | |
| SBS | Chr10 | 2450561 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g019600 |
| SBS | Chr10 | 11727240 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14275360 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 17849338 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7358759 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 27289110 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 4387853 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6880911 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9670452 | C-A | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88990 | 88991 | 1 | |
| Deletion | Chr8 | 994577 | 994578 | 1 | |
| Deletion | Chr4 | 1363680 | 1363681 | 1 | |
| Deletion | Chr6 | 1714718 | 1714720 | 2 | |
| Deletion | Chr12 | 9005069 | 9005082 | 13 | |
| Deletion | Chr2 | 10638429 | 10638431 | 2 | OsKitaake02g125700 |
| Deletion | Chr5 | 12810040 | 12810045 | 5 | |
| Deletion | Chr5 | 12877879 | 12877897 | 18 | |
| Deletion | Chr1 | 16100853 | 16100857 | 4 | |
| Deletion | Chr8 | 16725926 | 16725927 | 1 | |
| Deletion | Chr11 | 16920432 | 16920433 | 1 | |
| Deletion | Chr12 | 18011397 | 18011399 | 2 | |
| Deletion | Chr5 | 21887001 | 21932000 | 44999 | OsKitaake05g178800 |
| Deletion | Chr1 | 24602667 | 24602669 | 2 | OsKitaake01g237700 |
| Deletion | Chr3 | 25703155 | 25703163 | 8 | |
| Deletion | Chr1 | 32791359 | 32791484 | 125 | |
| Deletion | Chr4 | 33660321 | 33660323 | 2 | |
| Deletion | Chr3 | 36379926 | 36379943 | 17 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 31965684 | 31965686 | 1 | |
| Insertion | Chr5 | 12532511 | 12532513 | 1 | |
| Insertion | Chr5 | 30236466 | 30236474 | 7 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3256325 | Chr8 | 20405456 | OsKitaake08g151000 |
| Translocation | Chr12 | 3256339 | Chr8 | 20406008 | OsKitaake08g151000 |
| Translocation | Chr10 | 9304236 | Chr8 | 20363502 | |
| Translocation | Chr10 | 9304240 | Chr8 | 20405436 | OsKitaake08g151000 |
| Translocation | Chr10 | 21630001 | Chr1 | 3827932 | OsKitaake01g051700 |
| Translocation | Chr10 | 21630007 | Chr1 | 3826171 | OsKitaake01g051700 |