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| Mutant Information |
|---|
| Mutant Name | 701-2 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 701-2 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16793141 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g178100 |
| SBS | Chr1 | 37807526 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 1186467 | C-G | Hetero | INTRON | |
| SBS | Chr2 | 20323320 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23304627 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9163496 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13044305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23185367 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26024753 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30007087 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 14059793 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 25117170 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 906519 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 15473270 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17345965 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 21623165 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26712506 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7275275 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 9332078 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9392818 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23331907 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23589442 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr11 | 3967051 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21493232 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 969470 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g014100 |
| SBS | Chr12 | 4387853 | C-T | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 3676819 | 3676820 | 1 | |
| Deletion | Chr12 | 5377075 | 5377076 | 1 | |
| Deletion | Chr4 | 6021001 | 6275000 | 253999 | 16 |
| Deletion | Chr6 | 6343023 | 6343028 | 5 | |
| Deletion | Chr11 | 6503006 | 6503007 | 1 | |
| Deletion | Chr3 | 14086189 | 14086191 | 2 | OsKitaake03g184200 |
| Deletion | Chr5 | 18455823 | 18455830 | 7 | OsKitaake05g143900 |
| Deletion | Chr1 | 30444899 | 30445096 | 197 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 32780571 | 32780574 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28124501 | Chr3 | 19410404 | |
| Translocation | Chr6 | 28124558 | Chr3 | 19410138 |