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Mutant Information

Mutant Name	701-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3780279 T-A Hetero INTERGENIC
SBS Chr1 25765719 C-T Hetero INTERGENIC
SBS Chr2 32702267 A-G Homo INTERGENIC
SBS Chr2 33397640 G-A Hetero INTERGENIC
SBS Chr4 23185367 G-A Homo INTERGENIC
SBS Chr4 26024753 A-T Homo INTERGENIC
SBS Chr4 30007087 T-A Homo INTERGENIC
SBS Chr5 6944398 A-G Hetero INTERGENIC
SBS Chr5 14059793 T-G Hetero INTERGENIC
SBS Chr6 1183478 C-T Hetero INTERGENIC
SBS Chr6 26047575 C-T Hetero INTERGENIC
SBS Chr7 906519 A-T Homo UTR_5_PRIME
SBS Chr7 26712506 A-C Hetero INTERGENIC
SBS Chr8 5383212 T-A Hetero INTRON
SBS Chr8 9392818 G-A Hetero INTERGENIC
SBS Chr8 23331907 T-A Hetero INTERGENIC
SBS Chr8 23589442 C-T Hetero UTR_5_PRIME
SBS Chr8 27734291 A-T Homo INTERGENIC
SBS Chr9 3625323 T-G Hetero INTERGENIC
SBS Chr10 22319051 T-A Hetero INTERGENIC
SBS Chr11 8625560 C-T Homo INTERGENIC
SBS Chr12 20081133 T-A Hetero INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2525826 2525828 2
Deletion Chr11 2611682 2611684 2 OsKitaake11g037600
Deletion Chr4 6021001 6275000 253999 16
Deletion Chr6 6343023 6343028 5
Deletion Chr7 6932784 6932904 120
Deletion Chr1 8144723 8144730 7 OsKitaake01g101600
Deletion Chr1 9623342 9623352 10
Deletion Chr11 10787711 10787821 110
Deletion Chr7 13721001 13725000 3999
Deletion Chr2 13837961 13837963 2
Deletion Chr1 13956728 13956729 1
Deletion Chr4 17722892 17722893 1
Deletion Chr5 18304308 18304309 1
Deletion Chr2 19020142 19020220 78
Deletion Chr11 21793351 21793442 91
Deletion Chr7 21976534 21976536 2
Deletion Chr7 25841001 25848000 6999 2
Deletion Chr8 25958195 25958209 14
Deletion Chr7 28807347 28807354 7
Deletion Chr2 29688527 29688534 7
Deletion Chr4 30265010 30265021 11
Deletion Chr2 35791492 35791613 121
Deletion Chr1 37392666 37392667 1 OsKitaake01g399300

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1501004 1501007 2
Insertion Chr8 29021087 29021090 2
Insertion Chr1 17287832 17287834 1
Insertion Chr3 20013921 20013923 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3780279	T-A	Hetero	INTERGENIC
SBS	Chr1	25765719	C-T	Hetero	INTERGENIC
SBS	Chr2	32702267	A-G	Homo	INTERGENIC
SBS	Chr2	33397640	G-A	Hetero	INTERGENIC
SBS	Chr4	23185367	G-A	Homo	INTERGENIC
SBS	Chr4	26024753	A-T	Homo	INTERGENIC
SBS	Chr4	30007087	T-A	Homo	INTERGENIC
SBS	Chr5	6944398	A-G	Hetero	INTERGENIC
SBS	Chr5	14059793	T-G	Hetero	INTERGENIC
SBS	Chr6	1183478	C-T	Hetero	INTERGENIC
SBS	Chr6	26047575	C-T	Hetero	INTERGENIC
SBS	Chr7	906519	A-T	Homo	UTR_5_PRIME
SBS	Chr7	26712506	A-C	Hetero	INTERGENIC
SBS	Chr8	5383212	T-A	Hetero	INTRON
SBS	Chr8	9392818	G-A	Hetero	INTERGENIC
SBS	Chr8	23331907	T-A	Hetero	INTERGENIC
SBS	Chr8	23589442	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	27734291	A-T	Homo	INTERGENIC
SBS	Chr9	3625323	T-G	Hetero	INTERGENIC
SBS	Chr10	22319051	T-A	Hetero	INTERGENIC
SBS	Chr11	8625560	C-T	Homo	INTERGENIC
SBS	Chr12	20081133	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2525826	2525828	2
Deletion	Chr11	2611682	2611684	2	OsKitaake11g037600
Deletion	Chr4	6021001	6275000	253999	16
Deletion	Chr6	6343023	6343028	5
Deletion	Chr7	6932784	6932904	120
Deletion	Chr1	8144723	8144730	7	OsKitaake01g101600
Deletion	Chr1	9623342	9623352	10
Deletion	Chr11	10787711	10787821	110
Deletion	Chr7	13721001	13725000	3999
Deletion	Chr2	13837961	13837963	2
Deletion	Chr1	13956728	13956729	1
Deletion	Chr4	17722892	17722893	1
Deletion	Chr5	18304308	18304309	1
Deletion	Chr2	19020142	19020220	78
Deletion	Chr11	21793351	21793442	91
Deletion	Chr7	21976534	21976536	2
Deletion	Chr7	25841001	25848000	6999	2
Deletion	Chr8	25958195	25958209	14
Deletion	Chr7	28807347	28807354	7
Deletion	Chr2	29688527	29688534	7
Deletion	Chr4	30265010	30265021	11
Deletion	Chr2	35791492	35791613	121
Deletion	Chr1	37392666	37392667	1	OsKitaake01g399300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes