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| Mutant Information |
|---|
| Mutant Name | 701-4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 701-4 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20291072 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 34181032 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37807526 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 32702267 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 20888747 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 20244948 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23185367 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 26024753 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4701835 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12074627 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15124792 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 906519 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 17345965 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 1027076 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6587124 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7052393 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12242887 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28250116 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14275360 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15393071 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 15757320 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25520199 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 969470 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g014100 |
| SBS | Chr12 | 4387853 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8584707 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21540614 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 25100618 | T-G | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 6020001 | 6277000 | 256999 | 16 |
| Deletion | Chr6 | 6065224 | 6065226 | 2 | OsKitaake06g079800 |
| Deletion | Chr5 | 17846395 | 17846400 | 5 | |
| Deletion | Chr10 | 17901753 | 17901761 | 8 | |
| Deletion | Chr11 | 20594426 | 20594427 | 1 | |
| Deletion | Chr8 | 25958195 | 25958209 | 14 | |
| Deletion | Chr3 | 29711027 | 29711029 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 973523 | 973527 | 3 | |
| Insertion | Chr8 | 29021087 | 29021090 | 2 | |
| Insertion | Chr2 | 13854529 | 13854531 | 1 | |
| Insertion | Chr9 | 2667591 | 2667595 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28124553 | Chr3 | 19410414 | |
| Translocation | Chr6 | 28124558 | Chr3 | 19410138 |