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| Mutant Information |
|---|
| Mutant Name | 701-5 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 701-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24206540 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37807526 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15199688 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 32702267 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 3538913 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17031313 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 30007087 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 4701835 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 17039147 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 906519 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 2986039 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15473270 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17345965 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7052393 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 12242887 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23331907 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23589442 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 6888380 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 9475277 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14275360 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14301821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25271772 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 969470 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g014100 |
| SBS | Chr12 | 4172797 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g057066 |
| SBS | Chr12 | 9533720 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21540614 | C-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1999795 | 1999808 | 13 | |
| Deletion | Chr11 | 6503006 | 6503007 | 1 | |
| Deletion | Chr5 | 6785620 | 6785622 | 2 | OsKitaake05g068400 |
| Deletion | Chr1 | 8144723 | 8144730 | 7 | OsKitaake01g101600 |
| Deletion | Chr1 | 9623342 | 9623352 | 10 | |
| Deletion | Chr12 | 9923584 | 9923601 | 17 | |
| Deletion | Chr3 | 12503001 | 12517000 | 13999 | 3 |
| Deletion | Chr10 | 15463966 | 15463969 | 3 | |
| Deletion | Chr5 | 17846395 | 17846400 | 5 | |
| Deletion | Chr10 | 17901753 | 17901761 | 8 | |
| Deletion | Chr5 | 30258420 | 30258421 | 1 | |
| Deletion | Chr1 | 43453968 | 43453970 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 23588415 | 23588419 | 3 | |
| Insertion | Chr4 | 32780571 | 32780574 | 2 | |
| Insertion | Chr6 | 17621 | 17623 | 1 | |
| Insertion | Chr6 | 16020336 | 16020338 | 1 | OsKitaake06g154000  |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28124553 | Chr3 | 19410414 | |
| Translocation | Chr6 | 28124558 | Chr3 | 19410138 |