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Mutant Information

Mutant Name	701-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-6 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37807526 G-A Homo INTERGENIC
SBS Chr3 19410476 G-C Homo INTERGENIC
SBS Chr3 19875838 G-A Hetero INTERGENIC
SBS Chr3 20888747 C-G Homo INTERGENIC
SBS Chr4 5644259 C-A Homo INTERGENIC
SBS Chr4 23185367 G-A Hetero INTERGENIC
SBS Chr4 29713185 C-T Homo INTERGENIC
SBS Chr5 3958401 G-A Hetero INTERGENIC
SBS Chr6 21632758 G-A Hetero INTERGENIC
SBS Chr7 15473270 G-A Hetero INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr7 26712506 A-C Homo INTERGENIC
SBS Chr8 7052393 G-C Hetero INTERGENIC
SBS Chr8 12242887 C-T Homo INTERGENIC
SBS Chr8 12853825 G-A Homo INTERGENIC
SBS Chr8 25958192 C-T Homo INTRON
SBS Chr10 4218089 G-A Homo SYNONYMOUS_CODING
SBS Chr10 12841393 A-T Hetero INTERGENIC
SBS Chr10 14275360 A-G Homo INTERGENIC
SBS Chr11 10759751 G-A Hetero INTERGENIC
SBS Chr11 13966968 A-G Homo INTRON
SBS Chr11 16177656 T-A Homo INTERGENIC
SBS Chr12 969470 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g014100
SBS Chr12 26371808 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6364669 6364681 12
Deletion Chr1 9623342 9623352 10
Deletion Chr3 12502001 12516000 13999 3
Deletion Chr7 13725001 13729000 3999
Deletion Chr6 15742351 15742352 1
Deletion Chr5 17846395 17846400 5
Deletion Chr10 17901753 17901761 8
Deletion Chr12 18357941 18358109 168
Deletion Chr3 20050721 20050876 155
Deletion Chr1 23220895 23220912 17 OsKitaake01g222000
Deletion Chr7 25841001 25848000 6999 2
Deletion Chr8 26413880 26414025 145
Deletion Chr7 28807347 28807354 7
Deletion Chr1 43453968 43453970 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23588415 23588419 3
Insertion Chr2 18332282 18332286 3
Insertion Chr4 32780571 32780574 2
Insertion Chr5 30224202 30224204 1
Insertion Chr8 13240636 13240647 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37807526	G-A	Homo	INTERGENIC
SBS	Chr3	19410476	G-C	Homo	INTERGENIC
SBS	Chr3	19875838	G-A	Hetero	INTERGENIC
SBS	Chr3	20888747	C-G	Homo	INTERGENIC
SBS	Chr4	5644259	C-A	Homo	INTERGENIC
SBS	Chr4	23185367	G-A	Hetero	INTERGENIC
SBS	Chr4	29713185	C-T	Homo	INTERGENIC
SBS	Chr5	3958401	G-A	Hetero	INTERGENIC
SBS	Chr6	21632758	G-A	Hetero	INTERGENIC
SBS	Chr7	15473270	G-A	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr7	26712506	A-C	Homo	INTERGENIC
SBS	Chr8	7052393	G-C	Hetero	INTERGENIC
SBS	Chr8	12242887	C-T	Homo	INTERGENIC
SBS	Chr8	12853825	G-A	Homo	INTERGENIC
SBS	Chr8	25958192	C-T	Homo	INTRON
SBS	Chr10	4218089	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	12841393	A-T	Hetero	INTERGENIC
SBS	Chr10	14275360	A-G	Homo	INTERGENIC
SBS	Chr11	10759751	G-A	Hetero	INTERGENIC
SBS	Chr11	13966968	A-G	Homo	INTRON
SBS	Chr11	16177656	T-A	Homo	INTERGENIC
SBS	Chr12	969470	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g014100
SBS	Chr12	26371808	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6364669	6364681	12
Deletion	Chr1	9623342	9623352	10
Deletion	Chr3	12502001	12516000	13999	3
Deletion	Chr7	13725001	13729000	3999
Deletion	Chr6	15742351	15742352	1
Deletion	Chr5	17846395	17846400	5
Deletion	Chr10	17901753	17901761	8
Deletion	Chr12	18357941	18358109	168
Deletion	Chr3	20050721	20050876	155
Deletion	Chr1	23220895	23220912	17	OsKitaake01g222000
Deletion	Chr7	25841001	25848000	6999	2
Deletion	Chr8	26413880	26414025	145
Deletion	Chr7	28807347	28807354	7
Deletion	Chr1	43453968	43453970	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes