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Mutant Information

Mutant Name	701-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-7 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15236568 C-T Hetero INTRON
SBS Chr1 33206122 A-G Hetero INTERGENIC
SBS Chr1 37807526 G-A Homo INTERGENIC
SBS Chr2 15199688 A-G Homo INTERGENIC
SBS Chr3 13460431 G-A Hetero INTERGENIC
SBS Chr3 20888747 C-G Hetero INTERGENIC
SBS Chr3 22407895 G-A Hetero INTERGENIC
SBS Chr4 23185367 G-A Homo INTERGENIC
SBS Chr4 26024753 A-T Hetero INTERGENIC
SBS Chr4 30007087 T-A Homo INTERGENIC
SBS Chr5 4701835 G-A Hetero INTERGENIC
SBS Chr5 5060196 C-T Hetero INTERGENIC
SBS Chr5 14059793 T-G Hetero INTERGENIC
SBS Chr7 906519 A-T Homo UTR_5_PRIME
SBS Chr7 4324187 G-A Homo INTERGENIC
SBS Chr7 15473270 G-A Hetero INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr7 26712506 A-C Homo INTERGENIC
SBS Chr8 7052393 G-C Hetero INTERGENIC
SBS Chr8 9392818 G-A Hetero INTERGENIC
SBS Chr8 10620481 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 12242887 C-T Hetero INTERGENIC
SBS Chr8 23331907 T-A Hetero INTERGENIC
SBS Chr8 23589442 C-T Hetero UTR_5_PRIME
SBS Chr9 20984019 A-G Hetero INTERGENIC
SBS Chr10 14275360 A-G Homo INTERGENIC
SBS Chr11 1839429 G-T Hetero INTERGENIC
SBS Chr12 969470 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g014100
SBS Chr12 4387853 C-T Hetero INTERGENIC
SBS Chr12 21540614 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6021001 6103000 81999 4
Deletion Chr4 6106001 6275000 168999 12
Deletion Chr6 6343023 6343028 5
Deletion Chr11 6503006 6503007 1
Deletion Chr1 9403648 9403649 1
Deletion Chr4 10335753 10335754 1
Deletion Chr8 10683908 10683912 4
Deletion Chr3 12503001 12517000 13999 3
Deletion Chr12 18339464 18339531 67
Deletion Chr5 18455823 18455830 7 OsKitaake05g143900
Deletion Chr11 20594426 20594427 1
Deletion Chr11 20708751 20708757 6
Deletion Chr7 25841001 25848000 6999 2
Deletion Chr3 25941349 25941350 1
Deletion Chr5 30211755 30211756 1
Deletion Chr1 36424017 36424018 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23588415 23588419 3
Insertion Chr4 32780571 32780574 2
Insertion Chr5 30226856 30226864 7
Insertion Chr6 446 448 1
Insertion Chr8 7323137 7323139 1
Insertion Chr10 1175187 1175190 2
Insertion Chr12 11713778 11713780 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15236568	C-T	Hetero	INTRON
SBS	Chr1	33206122	A-G	Hetero	INTERGENIC
SBS	Chr1	37807526	G-A	Homo	INTERGENIC
SBS	Chr2	15199688	A-G	Homo	INTERGENIC
SBS	Chr3	13460431	G-A	Hetero	INTERGENIC
SBS	Chr3	20888747	C-G	Hetero	INTERGENIC
SBS	Chr3	22407895	G-A	Hetero	INTERGENIC
SBS	Chr4	23185367	G-A	Homo	INTERGENIC
SBS	Chr4	26024753	A-T	Hetero	INTERGENIC
SBS	Chr4	30007087	T-A	Homo	INTERGENIC
SBS	Chr5	4701835	G-A	Hetero	INTERGENIC
SBS	Chr5	5060196	C-T	Hetero	INTERGENIC
SBS	Chr5	14059793	T-G	Hetero	INTERGENIC
SBS	Chr7	906519	A-T	Homo	UTR_5_PRIME
SBS	Chr7	4324187	G-A	Homo	INTERGENIC
SBS	Chr7	15473270	G-A	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr7	26712506	A-C	Homo	INTERGENIC
SBS	Chr8	7052393	G-C	Hetero	INTERGENIC
SBS	Chr8	9392818	G-A	Hetero	INTERGENIC
SBS	Chr8	10620481	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	12242887	C-T	Hetero	INTERGENIC
SBS	Chr8	23331907	T-A	Hetero	INTERGENIC
SBS	Chr8	23589442	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	20984019	A-G	Hetero	INTERGENIC
SBS	Chr10	14275360	A-G	Homo	INTERGENIC
SBS	Chr11	1839429	G-T	Hetero	INTERGENIC
SBS	Chr12	969470	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g014100
SBS	Chr12	4387853	C-T	Hetero	INTERGENIC
SBS	Chr12	21540614	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6021001	6103000	81999	4
Deletion	Chr4	6106001	6275000	168999	12
Deletion	Chr6	6343023	6343028	5
Deletion	Chr11	6503006	6503007	1
Deletion	Chr1	9403648	9403649	1
Deletion	Chr4	10335753	10335754	1
Deletion	Chr8	10683908	10683912	4
Deletion	Chr3	12503001	12517000	13999	3
Deletion	Chr12	18339464	18339531	67
Deletion	Chr5	18455823	18455830	7	OsKitaake05g143900
Deletion	Chr11	20594426	20594427	1
Deletion	Chr11	20708751	20708757	6
Deletion	Chr7	25841001	25848000	6999	2
Deletion	Chr3	25941349	25941350	1
Deletion	Chr5	30211755	30211756	1
Deletion	Chr1	36424017	36424018	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes