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Mutant Information

Mutant Name	701-8 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 701-8 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 14

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37807526 G-A Homo INTERGENIC
SBS Chr2 15199688 A-G Homo INTERGENIC
SBS Chr2 32702267 A-G Hetero INTERGENIC
SBS Chr4 13365848 G-T Hetero INTERGENIC
SBS Chr4 22428211 C-T Hetero INTERGENIC
SBS Chr5 4701835 G-A Homo INTERGENIC
SBS Chr5 14059793 T-G Hetero INTERGENIC
SBS Chr7 15473270 G-A Hetero INTERGENIC
SBS Chr7 26712506 A-C Homo INTERGENIC
SBS Chr8 9392818 G-A Homo INTERGENIC
SBS Chr10 14275360 A-G Hetero INTERGENIC
SBS Chr11 19986931 A-T Hetero INTRON
SBS Chr12 969470 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g014100
SBS Chr12 21540614 C-T Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1423020 1423145 125
Deletion Chr12 1671689 1671690 1 OsKitaake12g025300
Deletion Chr10 2225051 2225053 2
Deletion Chr9 3553324 3553405 81
Deletion Chr5 5375602 5375673 71
Deletion Chr4 6018001 6275000 256999 16
Deletion Chr9 6686003 6686105 102
Deletion Chr3 7566407 7566409 2
Deletion Chr10 8675813 8675979 166
Deletion Chr9 8756621 8756623 2
Deletion Chr4 10257769 10257771 2
Deletion Chr9 11240299 11240514 215
Deletion Chr3 12502001 12519000 16999 4
Deletion Chr8 12807026 12807027 1
Deletion Chr2 13844476 13844477 1
Deletion Chr12 15312620 15312711 91
Deletion Chr3 17169811 17170037 226
Deletion Chr5 18304308 18304309 1
Deletion Chr8 18880757 18880824 67
Deletion Chr11 20138634 20138731 97
Deletion Chr5 21378777 21378845 68
Deletion Chr5 23716579 23716936 357
Deletion Chr2 27791231 27791232 1 OsKitaake02g279400

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28695882 28695927 44
Insertion Chr4 4690379 4690381 1
Insertion Chr5 30225097 30225105 7
Insertion Chr5 30231639 30231641 1
Insertion Chr5 30240668 30240670 1
Insertion Chr8 13431372 13431374 1
Insertion Chr9 10068067 10068069 1
Insertion Chr12 11211139 11211141 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8478034 Chr1 3101839
Translocation Chr7 20583428 Chr5 3735554

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37807526	G-A	Homo	INTERGENIC
SBS	Chr2	15199688	A-G	Homo	INTERGENIC
SBS	Chr2	32702267	A-G	Hetero	INTERGENIC
SBS	Chr4	13365848	G-T	Hetero	INTERGENIC
SBS	Chr4	22428211	C-T	Hetero	INTERGENIC
SBS	Chr5	4701835	G-A	Homo	INTERGENIC
SBS	Chr5	14059793	T-G	Hetero	INTERGENIC
SBS	Chr7	15473270	G-A	Hetero	INTERGENIC
SBS	Chr7	26712506	A-C	Homo	INTERGENIC
SBS	Chr8	9392818	G-A	Homo	INTERGENIC
SBS	Chr10	14275360	A-G	Hetero	INTERGENIC
SBS	Chr11	19986931	A-T	Hetero	INTRON
SBS	Chr12	969470	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g014100
SBS	Chr12	21540614	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1423020	1423145	125
Deletion	Chr12	1671689	1671690	1	OsKitaake12g025300
Deletion	Chr10	2225051	2225053	2
Deletion	Chr9	3553324	3553405	81
Deletion	Chr5	5375602	5375673	71
Deletion	Chr4	6018001	6275000	256999	16
Deletion	Chr9	6686003	6686105	102
Deletion	Chr3	7566407	7566409	2
Deletion	Chr10	8675813	8675979	166
Deletion	Chr9	8756621	8756623	2
Deletion	Chr4	10257769	10257771	2
Deletion	Chr9	11240299	11240514	215
Deletion	Chr3	12502001	12519000	16999	4
Deletion	Chr8	12807026	12807027	1
Deletion	Chr2	13844476	13844477	1
Deletion	Chr12	15312620	15312711	91
Deletion	Chr3	17169811	17170037	226
Deletion	Chr5	18304308	18304309	1
Deletion	Chr8	18880757	18880824	67
Deletion	Chr11	20138634	20138731	97
Deletion	Chr5	21378777	21378845	68
Deletion	Chr5	23716579	23716936	357
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8478034	Chr1	3101839
Translocation	Chr7	20583428	Chr5	3735554

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes