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Mutant Information

Mutant Name	702-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11637162 G-A Hetero INTERGENIC
SBS Chr1 33550825 C-A Homo INTERGENIC
SBS Chr1 43149128 C-G Homo UTR_3_PRIME
SBS Chr2 20194194 A-G Homo INTERGENIC
SBS Chr2 34047023 G-A Hetero INTERGENIC
SBS Chr2 36229859 C-T Hetero INTRON
SBS Chr3 14154630 T-A Homo INTERGENIC
SBS Chr3 25163523 A-T Homo INTERGENIC
SBS Chr3 25910810 G-A Homo INTERGENIC
SBS Chr3 26981660 A-G Homo INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 666116 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g005300
SBS Chr4 3656291 C-T Hetero INTRON
SBS Chr4 3868730 C-A Hetero INTERGENIC
SBS Chr4 12906604 T-C Hetero INTERGENIC
SBS Chr4 32933946 G-A Homo INTERGENIC
SBS Chr5 18178400 C-A Homo INTERGENIC
SBS Chr6 24304350 C-A Homo INTERGENIC
SBS Chr7 8168537 A-G Homo INTRON
SBS Chr7 27288202 G-A Homo INTERGENIC
SBS Chr8 8379322 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g076600
SBS Chr8 22712975 C-G Hetero INTERGENIC
SBS Chr9 10899833 C-G Homo INTERGENIC
SBS Chr11 2058074 A-G Homo INTRON
SBS Chr11 16328369 C-A Homo INTERGENIC
SBS Chr11 25479923 C-A Homo INTERGENIC
SBS Chr12 24882880 C-A Homo INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 19031 19032 1
Deletion Chr6 20090 20091 1
Deletion Chr6 4777282 4777289 7
Deletion Chr6 5320538 5320550 12
Deletion Chr12 7482597 7482598 1
Deletion Chr10 8678870 8679035 165
Deletion Chr6 12217649 12217651 2
Deletion Chr11 12671141 12671142 1
Deletion Chr7 13722001 13726000 3999
Deletion Chr2 14253176 14253180 4
Deletion Chr6 14331090 14331268 178
Deletion Chr8 14690374 14690375 1
Deletion Chr10 14761419 14761421 2
Deletion Chr7 15320358 15320359 1
Deletion Chr6 16362410 16362413 3
Deletion Chr5 16415001 16439000 23999
Deletion Chr2 21325300 21325307 7
Deletion Chr4 24978435 24978436 1 OsKitaake04g167100
Deletion Chr5 30211755 30211756 1
Deletion Chr6 30750416 30750419 3
Deletion Chr1 33060656 33060657 1
Deletion Chr4 34772103 34772104 1
Deletion Chr3 35339037 35339038 1 OsKitaake03g387600
Deletion Chr1 37663344 37663349 5

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 7905022 7905026 3
Insertion Chr11 4360869 4360872 2
Insertion Chr5 10944141 10944143 1
Insertion Chr5 12633210 12633212 1
Insertion Chr6 22207 22209 1
Insertion Chr7 20256446 20256448 1
Insertion Chr8 8960295 8960297 1
Insertion Chr9 14746087 14746089 1
Insertion Chr10 8598209 8598214 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4858474 5475321
Inversion Chr6 5475320 5540233 OsKitaake06g073800
Inversion Chr12 24703304 24764984 OsKitaake12g200801

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11998347 Chr9 4267529
Translocation Chr10 13129859 Chr4 9662386
Translocation Chr11 24924390 Chr3 10399017

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11637162	G-A	Hetero	INTERGENIC
SBS	Chr1	33550825	C-A	Homo	INTERGENIC
SBS	Chr1	43149128	C-G	Homo	UTR_3_PRIME
SBS	Chr2	20194194	A-G	Homo	INTERGENIC
SBS	Chr2	34047023	G-A	Hetero	INTERGENIC
SBS	Chr2	36229859	C-T	Hetero	INTRON
SBS	Chr3	14154630	T-A	Homo	INTERGENIC
SBS	Chr3	25163523	A-T	Homo	INTERGENIC
SBS	Chr3	25910810	G-A	Homo	INTERGENIC
SBS	Chr3	26981660	A-G	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	666116	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g005300
SBS	Chr4	3656291	C-T	Hetero	INTRON
SBS	Chr4	3868730	C-A	Hetero	INTERGENIC
SBS	Chr4	12906604	T-C	Hetero	INTERGENIC
SBS	Chr4	32933946	G-A	Homo	INTERGENIC
SBS	Chr5	18178400	C-A	Homo	INTERGENIC
SBS	Chr6	24304350	C-A	Homo	INTERGENIC
SBS	Chr7	8168537	A-G	Homo	INTRON
SBS	Chr7	27288202	G-A	Homo	INTERGENIC
SBS	Chr8	8379322	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g076600
SBS	Chr8	22712975	C-G	Hetero	INTERGENIC
SBS	Chr9	10899833	C-G	Homo	INTERGENIC
SBS	Chr11	2058074	A-G	Homo	INTRON
SBS	Chr11	16328369	C-A	Homo	INTERGENIC
SBS	Chr11	25479923	C-A	Homo	INTERGENIC
SBS	Chr12	24882880	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	19031	19032	1
Deletion	Chr6	20090	20091	1
Deletion	Chr6	4777282	4777289	7
Deletion	Chr6	5320538	5320550	12
Deletion	Chr12	7482597	7482598	1
Deletion	Chr10	8678870	8679035	165
Deletion	Chr6	12217649	12217651	2
Deletion	Chr11	12671141	12671142	1
Deletion	Chr7	13722001	13726000	3999
Deletion	Chr2	14253176	14253180	4
Deletion	Chr6	14331090	14331268	178
Deletion	Chr8	14690374	14690375	1
Deletion	Chr10	14761419	14761421	2
Deletion	Chr7	15320358	15320359	1
Deletion	Chr6	16362410	16362413	3
Deletion	Chr5	16415001	16439000	23999
Deletion	Chr2	21325300	21325307	7
Deletion	Chr4	24978435	24978436	1	OsKitaake04g167100
Deletion	Chr5	30211755	30211756	1
Deletion	Chr6	30750416	30750419	3
Deletion	Chr1	33060656	33060657	1
Deletion	Chr4	34772103	34772104	1
Deletion	Chr3	35339037	35339038	1	OsKitaake03g387600
Deletion	Chr1	37663344	37663349	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4858474	5475321
Inversion	Chr6	5475320	5540233	OsKitaake06g073800
Inversion	Chr12	24703304	24764984	OsKitaake12g200801

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes