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Mutant Information

Mutant Name	702-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-2-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3876006	G-A	Homo	INTERGENIC
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	18913993	A-G	Homo	INTERGENIC
SBS	Chr1	30337034	G-A	Hetero	INTERGENIC
SBS	Chr1	31476855	C-A	Hetero	INTERGENIC
SBS	Chr1	34123760	A-C	Hetero	INTERGENIC
SBS	Chr1	35796728	G-C	Hetero	INTERGENIC
SBS	Chr2	2467204	T-C	Hetero	INTERGENIC
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	7177836	C-T	Homo	INTERGENIC
SBS	Chr2	32358080	C-T	Hetero	INTERGENIC
SBS	Chr3	11405595	A-C	Hetero	INTERGENIC
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	20680152	A-C	Hetero	INTERGENIC
SBS	Chr3	20680155	G-A	Hetero	INTERGENIC
SBS	Chr3	23353467	A-G	Hetero	INTERGENIC
SBS	Chr3	25910810	G-A	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Hetero	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	19647876	A-G	Hetero	INTERGENIC
SBS	Chr5	6187955	T-C	Homo	INTERGENIC
SBS	Chr5	6873827	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	12453564	G-A	Homo	INTERGENIC
SBS	Chr6	4718700	C-A	Hetero	INTERGENIC
SBS	Chr6	7371323	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	12169962	C-T	Hetero	INTERGENIC
SBS	Chr7	21889794	G-C	Homo	INTERGENIC
SBS	Chr7	27288202	G-A	Homo	INTERGENIC
SBS	Chr8	14337670	C-G	Hetero	INTERGENIC
SBS	Chr9	1055718	G-C	Hetero	INTERGENIC
SBS	Chr9	8320527	T-C	Hetero	INTERGENIC
SBS	Chr9	8341496	A-G	Hetero	INTERGENIC
SBS	Chr9	14464479	G-A	Hetero	INTERGENIC
SBS	Chr10	16948567	G-A	Homo	INTERGENIC
SBS	Chr10	17293486	C-T	Homo	INTERGENIC
SBS	Chr11	10028386	G-A	Hetero	INTERGENIC
SBS	Chr11	16328369	C-A	Homo	INTERGENIC
SBS	Chr11	21385651	C-T	Hetero	INTERGENIC
SBS	Chr12	6049616	G-A	Homo	INTERGENIC
SBS	Chr12	9733234	C-T	Hetero	INTERGENIC
SBS	Chr12	13589146	G-C	Hetero	INTERGENIC
SBS	Chr12	13873336	T-A	Homo	INTERGENIC
SBS	Chr12	15984076	G-A	Hetero	INTERGENIC
SBS	Chr12	18321662	T-A	Hetero	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88990	88991	1
Deletion	Chr2	367894	367900	6
Deletion	Chr5	2251060	2251062	2	OsKitaake05g025100
Deletion	Chr1	2632442	2632444	2
Deletion	Chr6	4130063	4130064	1
Deletion	Chr9	5282193	5282198	5
Deletion	Chr3	5430201	5430202	1
Deletion	Chr4	6094191	6094192	1
Deletion	Chr3	8143087	8143089	2	OsKitaake03g112800
Deletion	Chr10	8678870	8679035	165
Deletion	Chr6	9539974	9539975	1
Deletion	Chr4	10450844	10450854	10
Deletion	Chr11	12522101	12522266	165
Deletion	Chr11	12524668	12524833	165
Deletion	Chr10	13038911	13038919	8	OsKitaake10g079201
Deletion	Chr11	13326234	13326239	5
Deletion	Chr8	13713827	13713829	2
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr6	15750974	15750975	1
Deletion	Chr3	16214000	16214085	85
Deletion	Chr2	19594298	19594299	1	OsKitaake02g191600
Deletion	Chr3	20052841	20052996	155
Deletion	Chr6	21724644	21724645	1	OsKitaake06g191500
Deletion	Chr2	22529924	22529925	1
Deletion	Chr5	24020049	24020063	14
Deletion	Chr6	25918836	25918839	3	OsKitaake06g230800
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400
Deletion	Chr5	30226513	30226514	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr7	18906329	18906332	2
Insertion	Chr2	13778278	13778280	1
Insertion	Chr2	33558805	33558807	1
Insertion	Chr5	10944141	10944143	1
Insertion	Chr5	30215229	30215231	1
Insertion	Chr6	6994	6996	1
Insertion	Chr7	10588958	10588960	1

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11205664	Chr4	31279420	OsKitaake04g244400
Translocation	Chr7	11205675	Chr4	29384909
Translocation	Chr10	13260799	Chr4	9728838
Translocation	Chr8	15299736	Chr1	1514284
Translocation	Chr8	28960612	Chr1	30478358

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Variant Type

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Effect

Gene Affected

Variant Type

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Variant Type

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Variant Type

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Chromosome

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