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| Mutant Information |
|---|
| Mutant Name | 702-4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 702-4 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14640188 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16113507 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 18913993 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 30799383 | A-G | Homo | INTRON | |
| SBS | Chr2 | 10372205 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 14931897 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 23766973 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15634415 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20680152 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20680155 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21068036 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23353467 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 25910810 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34195643 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 3868730 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 22181005 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6187955 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 18374559 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13945250 | G-A | Homo | INTRON | |
| SBS | Chr7 | 27288202 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1856043 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10987537 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22669736 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 10406843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17429616 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 16328369 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16971539 | G-A | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1950826 | 1950829 | 3 | |
| Deletion | Chr11 | 3118210 | 3118214 | 4 | |
| Deletion | Chr6 | 4418908 | 4418909 | 1 | |
| Deletion | Chr4 | 8445099 | 8445100 | 1 | |
| Deletion | Chr12 | 8936016 | 8936018 | 2 | |
| Deletion | Chr6 | 9539295 | 9539299 | 4 | |
| Deletion | Chr3 | 10747220 | 10747222 | 2 | |
| Deletion | Chr12 | 14271791 | 14271797 | 6 | |
| Deletion | Chr5 | 18450701 | 18450702 | 1 | |
| Deletion | Chr2 | 20546340 | 20546341 | 1 | OsKitaake02g200000 |
| Deletion | Chr2 | 21014964 | 21014966 | 2 | |
| Deletion | Chr12 | 21358274 | 21358490 | 216 | |
| Deletion | Chr5 | 21652441 | 21652443 | 2 | |
| Deletion | Chr7 | 22306412 | 22306413 | 1 | |
| Deletion | Chr12 | 25899502 | 25899504 | 2 | |
| Deletion | Chr1 | 36305708 | 36305710 | 2 | |
| Deletion | Chr1 | 36354523 | 36354524 | 1 | OsKitaake01g386000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 17667878 | 17667880 | 1 | |
| Insertion | Chr6 | 4139320 | 4139325 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 4925037 | 4958923 | |
| Inversion | Chr6 | 4925042 | 4958934 |