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| Mutant Information |
|---|
| Mutant Name | 702-5-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 702-5-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8359452 | A-T | Homo | STOP_GAINED | OsKitaake01g104200 |
| SBS | Chr1 | 8359453 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g104200 |
| SBS | Chr1 | 11868668 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 14678121 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19090603 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19664305 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 30799383 | A-G | Homo | INTRON | |
| SBS | Chr2 | 2467204 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 10372205 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13862066 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20680152 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20680155 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21068036 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23353467 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 25910810 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3868730 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 6187955 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6873827 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 18374559 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 29016955 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13945250 | G-A | Homo | INTRON | |
| SBS | Chr7 | 27288202 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22669736 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 6106702 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16948567 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 16328369 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21385651 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28648905 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13929554 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16971539 | G-A | Homo | INTERGENIC |
Deletions: 22
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 367894 | 367900 | 6 | |
| Deletion | Chr5 | 1880125 | 1880127 | 2 | OsKitaake05g021000 |
| Deletion | Chr4 | 1950826 | 1950829 | 3 | |
| Deletion | Chr11 | 3118210 | 3118214 | 4 | |
| Deletion | Chr11 | 5781418 | 5781419 | 1 | |
| Deletion | Chr1 | 6263685 | 6263687 | 2 | |
| Deletion | Chr8 | 6949879 | 6949880 | 1 | |
| Deletion | Chr10 | 8706655 | 8706656 | 1 | |
| Deletion | Chr12 | 9319471 | 9319473 | 2 | |
| Deletion | Chr12 | 10803646 | 10803651 | 5 | |
| Deletion | Chr5 | 12028676 | 12028678 | 2 | |
| Deletion | Chr12 | 12099489 | 12099490 | 1 | 2 |
| Deletion | Chr10 | 13038911 | 13038919 | 8 | OsKitaake10g079201 |
| Deletion | Chr6 | 15099135 | 15099138 | 3 | |
| Deletion | Chr5 | 16055079 | 16055081 | 2 | |
| Deletion | Chr1 | 17283622 | 17284286 | 664 | |
| Deletion | Chr6 | 20039699 | 20039700 | 1 | |
| Deletion | Chr2 | 22529924 | 22529925 | 1 | |
| Deletion | Chr6 | 25918836 | 25918839 | 3 | OsKitaake06g230800 |
| Deletion | Chr1 | 36305708 | 36305710 | 2 | |
| Deletion | Chr1 | 36354523 | 36354524 | 1 | OsKitaake01g386000 |
| Deletion | Chr1 | 43719829 | 43719838 | 9 | OsKitaake01g486300 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13778037 | 13778040 | 2 | |
| Insertion | Chr6 | 17667878 | 17667880 | 1 | |
| Insertion | Chr9 | 14623396 | 14623400 | 3 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 30929835 | 31150532 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 6915272 | Chr6 | 5680843 | |
| Translocation | Chr7 | 11205664 | Chr4 | 31279420 | OsKitaake04g244400 |
| Translocation | Chr7 | 11205676 | Chr4 | 29384909 | |
| Translocation | Chr7 | 12367671 | Chr4 | 30929912 |