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| Mutant Information |
|---|
| Mutant Name | 702-6 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 702-6 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8359452 | A-T | Homo | STOP_GAINED | OsKitaake01g104200 |
| SBS | Chr1 | 8359453 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g104200 |
| SBS | Chr1 | 11868668 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16113507 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 30799383 | A-G | Homo | INTRON | |
| SBS | Chr1 | 32456630 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 7177836 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 14644536 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 14851676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24309588 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20680152 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20680155 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21068036 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23353467 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 5129966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6181161 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6187955 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 18374559 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13945250 | G-A | Homo | INTRON | |
| SBS | Chr7 | 27288202 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8436346 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8436347 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16948567 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17429616 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16328369 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21385651 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16971539 | G-A | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 4418908 | 4418909 | 1 | |
| Deletion | Chr6 | 5212851 | 5212852 | 1 | |
| Deletion | Chr6 | 9245994 | 9246007 | 13 | |
| Deletion | Chr5 | 10304566 | 10304567 | 1 | |
| Deletion | Chr12 | 10803646 | 10803651 | 5 | |
| Deletion | Chr11 | 14743855 | 14743856 | 1 | |
| Deletion | Chr6 | 25918836 | 25918839 | 3 | OsKitaake06g230800 |
| Deletion | Chr1 | 36305708 | 36305710 | 2 | |
| Deletion | Chr1 | 36354523 | 36354524 | 1 | OsKitaake01g386000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 17667878 | 17667880 | 1 | |
| Insertion | Chr4 | 4457804 | 4457806 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 4925037 | 4958923 | |
| Inversion | Chr6 | 4925042 | 4958934 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 25618289 | Chr2 | 7679286 |