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Mutant Information

Mutant Name	702-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 702-7 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 33550825 C-A Homo INTERGENIC
SBS Chr1 35796728 G-C Homo INTERGENIC
SBS Chr2 10927449 G-C Homo INTERGENIC
SBS Chr2 20194194 A-G Homo INTERGENIC
SBS Chr2 36229859 C-T Hetero INTRON
SBS Chr3 7427934 G-T Hetero INTERGENIC
SBS Chr3 14154630 T-A Hetero INTERGENIC
SBS Chr3 15634415 T-A Homo INTERGENIC
SBS Chr3 21068036 G-A Hetero INTERGENIC
SBS Chr3 25163523 A-T Hetero INTERGENIC
SBS Chr3 25910810 G-A Hetero INTERGENIC
SBS Chr3 26542589 C-T Hetero INTERGENIC
SBS Chr3 26981660 A-G Hetero INTERGENIC
SBS Chr3 29596339 G-A Homo INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 12906604 T-C Homo INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr6 24304350 C-A Homo INTERGENIC
SBS Chr7 1921922 G-A Homo INTERGENIC
SBS Chr7 12723592 T-G Homo INTERGENIC
SBS Chr7 13965507 T-C Hetero INTERGENIC
SBS Chr7 13977848 C-T Homo INTERGENIC
SBS Chr7 17421959 T-A Hetero INTERGENIC
SBS Chr7 27288202 G-A Hetero INTERGENIC
SBS Chr8 1421045 G-T Homo INTERGENIC
SBS Chr8 3117281 C-T Homo UTR_3_PRIME
SBS Chr8 17664546 G-A Homo INTERGENIC
SBS Chr9 6804899 T-C Homo INTRON
SBS Chr11 13228326 T-A Homo INTERGENIC
SBS Chr11 13601410 G-A Hetero INTERGENIC
SBS Chr11 16328369 C-A Homo INTERGENIC
SBS Chr11 25479923 C-A Homo INTERGENIC
SBS Chr11 28602870 C-T Hetero INTERGENIC
SBS Chr12 13873336 T-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr5 973523 973525 2
Deletion Chr9 1454778 1454780 2
Deletion Chr11 2375977 2375979 2
Deletion Chr3 5118093 5118344 251
Deletion Chr9 6064149 6064152 3
Deletion Chr11 6167510 6167511 1
Deletion Chr12 6840539 6840543 4
Deletion Chr5 9155544 9155640 96
Deletion Chr11 11757001 11851000 93999 2
Deletion Chr11 12785559 12785567 8
Deletion Chr12 12821972 12821975 3
Deletion Chr4 12896060 12896062 2
Deletion Chr2 14253176 14253180 4
Deletion Chr1 15229229 15229231 2
Deletion Chr6 16362410 16362413 3
Deletion Chr2 21325300 21325307 7
Deletion Chr7 26080246 26080247 1
Deletion Chr1 33060656 33060657 1
Deletion Chr1 33373553 33373562 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 26912875 26912878 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4858439 5475322
Inversion Chr6 5475320 5540233 OsKitaake06g073800
Inversion Chr12 24703305 24764984 OsKitaake12g200801

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 19939977 Chr3 10513498 OsKitaake03g144200
Translocation Chr12 24424531 Chr10 19942984 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	33550825	C-A	Homo	INTERGENIC
SBS	Chr1	35796728	G-C	Homo	INTERGENIC
SBS	Chr2	10927449	G-C	Homo	INTERGENIC
SBS	Chr2	20194194	A-G	Homo	INTERGENIC
SBS	Chr2	36229859	C-T	Hetero	INTRON
SBS	Chr3	7427934	G-T	Hetero	INTERGENIC
SBS	Chr3	14154630	T-A	Hetero	INTERGENIC
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	21068036	G-A	Hetero	INTERGENIC
SBS	Chr3	25163523	A-T	Hetero	INTERGENIC
SBS	Chr3	25910810	G-A	Hetero	INTERGENIC
SBS	Chr3	26542589	C-T	Hetero	INTERGENIC
SBS	Chr3	26981660	A-G	Hetero	INTERGENIC
SBS	Chr3	29596339	G-A	Homo	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	12906604	T-C	Homo	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr6	24304350	C-A	Homo	INTERGENIC
SBS	Chr7	1921922	G-A	Homo	INTERGENIC
SBS	Chr7	12723592	T-G	Homo	INTERGENIC
SBS	Chr7	13965507	T-C	Hetero	INTERGENIC
SBS	Chr7	13977848	C-T	Homo	INTERGENIC
SBS	Chr7	17421959	T-A	Hetero	INTERGENIC
SBS	Chr7	27288202	G-A	Hetero	INTERGENIC
SBS	Chr8	1421045	G-T	Homo	INTERGENIC
SBS	Chr8	3117281	C-T	Homo	UTR_3_PRIME
SBS	Chr8	17664546	G-A	Homo	INTERGENIC
SBS	Chr9	6804899	T-C	Homo	INTRON
SBS	Chr11	13228326	T-A	Homo	INTERGENIC
SBS	Chr11	13601410	G-A	Hetero	INTERGENIC
SBS	Chr11	16328369	C-A	Homo	INTERGENIC
SBS	Chr11	25479923	C-A	Homo	INTERGENIC
SBS	Chr11	28602870	C-T	Hetero	INTERGENIC
SBS	Chr12	13873336	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr5	973523	973525	2
Deletion	Chr9	1454778	1454780	2
Deletion	Chr11	2375977	2375979	2
Deletion	Chr3	5118093	5118344	251
Deletion	Chr9	6064149	6064152	3
Deletion	Chr11	6167510	6167511	1
Deletion	Chr12	6840539	6840543	4
Deletion	Chr5	9155544	9155640	96
Deletion	Chr11	11757001	11851000	93999	2
Deletion	Chr11	12785559	12785567	8
Deletion	Chr12	12821972	12821975	3
Deletion	Chr4	12896060	12896062	2
Deletion	Chr2	14253176	14253180	4
Deletion	Chr1	15229229	15229231	2
Deletion	Chr6	16362410	16362413	3
Deletion	Chr2	21325300	21325307	7
Deletion	Chr7	26080246	26080247	1
Deletion	Chr1	33060656	33060657	1
Deletion	Chr1	33373553	33373562	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4858439	5475322
Inversion	Chr6	5475320	5540233	OsKitaake06g073800
Inversion	Chr12	24703305	24764984	OsKitaake12g200801

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes