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Mutant Information

Mutant Name	703-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18189769	G-T	Homo	INTERGENIC
SBS	Chr1	20211110	T-A	Homo	INTERGENIC
SBS	Chr1	25185693	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g243600
SBS	Chr1	25953558	A-T	Hetero	INTRON
SBS	Chr1	32221118	C-G	Hetero	INTERGENIC
SBS	Chr1	36858849	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g392400
SBS	Chr2	14042662	C-T	Hetero	INTERGENIC
SBS	Chr3	27305684	G-A	Hetero	INTERGENIC
SBS	Chr3	34130389	A-G	Homo	INTERGENIC
SBS	Chr4	13755848	C-A	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	26712122	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g192800
SBS	Chr5	10136899	A-G	Homo	INTERGENIC
SBS	Chr6	8629246	T-G	Hetero	INTERGENIC
SBS	Chr6	17615062	A-G	Homo	UTR_3_PRIME
SBS	Chr6	26759434	G-A	Hetero	INTERGENIC
SBS	Chr7	13048815	A-G	Hetero	INTRON
SBS	Chr7	18040587	T-A	Hetero	INTERGENIC
SBS	Chr7	24888221	T-C	Homo	INTERGENIC
SBS	Chr8	23943257	C-T	Hetero	INTERGENIC
SBS	Chr9	8289083	G-T	Hetero	INTERGENIC
SBS	Chr9	13452781	T-C	Homo	INTERGENIC
SBS	Chr9	14793289	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g101200
SBS	Chr9	20606071	G-A	Homo	INTERGENIC
SBS	Chr10	16634074	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g113800
SBS	Chr10	20157577	A-T	Homo	INTERGENIC
SBS	Chr10	20157578	A-T	Homo	INTERGENIC
SBS	Chr10	21448524	A-T	Homo	INTERGENIC
SBS	Chr11	9347285	T-A	Hetero	INTERGENIC
SBS	Chr11	23411147	C-T	Hetero	INTERGENIC
SBS	Chr12	7838567	G-T	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	86208	86218	10	OsKitaake05g000900
Deletion	Chr9	7870001	7922000	51999	3
Deletion	Chr9	8231001	8270000	38999	6
Deletion	Chr10	9792001	9847000	54999	3
Deletion	Chr3	10747220	10747222	2
Deletion	Chr12	11674297	11674298	1
Deletion	Chr2	15204456	15204613	157
Deletion	Chr2	16865404	16865412	8
Deletion	Chr4	17722892	17722893	1
Deletion	Chr11	18934231	18934232	1	OsKitaake11g147600
Deletion	Chr2	20642001	20720000	77999	2
Deletion	Chr9	20975701	20975703	2
Deletion	Chr11	21657101	21657102	1	OsKitaake11g171400
Deletion	Chr1	32100542	32100547	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	33127569	33127571	1	OsKitaake02g340200
Insertion	Chr3	15986072	15986075	2
Insertion	Chr7	16750824	16750827	2
Insertion	Chr1	25537567	25537570	2
Insertion	Chr2	13854529	13854531	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9437851	10255785
Inversion	Chr10	9624262	10255797
Inversion	Chr10	9842319	10229912

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3731102	Chr2	23429672	2
Translocation	Chr5	3731112	Chr2	23430439	OsKitaake05g044700
Translocation	Chr9	8227840	Chr2	23429669	OsKitaake02g229500
Translocation	Chr9	8228171	Chr2	23430453
Translocation	Chr9	20623469	Chr2	25288915