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Mutant Information

Mutant Name	703-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18189769 G-T Hetero INTERGENIC
SBS Chr1 25185693 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g243600
SBS Chr1 36858849 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g392400
SBS Chr3 6374317 G-A Hetero INTERGENIC
SBS Chr3 28890215 C-T Hetero INTERGENIC
SBS Chr3 37618990 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 33906346 C-T Homo INTERGENIC
SBS Chr5 8184543 T-C Homo INTERGENIC
SBS Chr5 17904172 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g138700
SBS Chr6 15877272 C-T Homo INTERGENIC
SBS Chr6 17615062 A-G Homo UTR_3_PRIME
SBS Chr6 26759434 G-A Homo INTERGENIC
SBS Chr9 1982032 C-T Hetero INTERGENIC
SBS Chr9 13313096 A-G Homo SYNONYMOUS_CODING
SBS Chr9 14793289 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g101200
SBS Chr10 16634074 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g113800
SBS Chr10 20157577 A-T Homo INTERGENIC
SBS Chr10 20157578 A-T Homo INTERGENIC
SBS Chr10 21448524 A-T Homo INTERGENIC
SBS Chr11 17099644 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g133500
SBS Chr12 20217494 A-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr3 9285356 9285357 1
Deletion Chr1 10116955 10116956 1
Deletion Chr7 15020501 15020503 2
Deletion Chr1 17186689 17186844 155
Deletion Chr2 20640001 20717000 76999 2
Deletion Chr4 21040687 21040688 1 OsKitaake04g115500
Deletion Chr5 25628419 25628536 117
Deletion Chr5 25925642 25925736 94
Deletion Chr7 25934535 25934536 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13857493 13857495 1
Insertion Chr2 35328984 35328987 2
Insertion Chr3 19260759 19260763 3
Insertion Chr5 12532511 12532513 1
Insertion Chr5 15513322 15513324 1
Insertion Chr5 30226359 30226361 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8227899 Chr2 23429669 OsKitaake02g229500
Translocation Chr9 8228171 Chr2 23430453
Translocation Chr10 20130074 Chr6 19710138 OsKitaake10g152600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18189769	G-T	Hetero	INTERGENIC
SBS	Chr1	25185693	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g243600
SBS	Chr1	36858849	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g392400
SBS	Chr3	6374317	G-A	Hetero	INTERGENIC
SBS	Chr3	28890215	C-T	Hetero	INTERGENIC
SBS	Chr3	37618990	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	33906346	C-T	Homo	INTERGENIC
SBS	Chr5	8184543	T-C	Homo	INTERGENIC
SBS	Chr5	17904172	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g138700
SBS	Chr6	15877272	C-T	Homo	INTERGENIC
SBS	Chr6	17615062	A-G	Homo	UTR_3_PRIME
SBS	Chr6	26759434	G-A	Homo	INTERGENIC
SBS	Chr9	1982032	C-T	Hetero	INTERGENIC
SBS	Chr9	13313096	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr9	14793289	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g101200
SBS	Chr10	16634074	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g113800
SBS	Chr10	20157577	A-T	Homo	INTERGENIC
SBS	Chr10	20157578	A-T	Homo	INTERGENIC
SBS	Chr10	21448524	A-T	Homo	INTERGENIC
SBS	Chr11	17099644	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g133500
SBS	Chr12	20217494	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr3	9285356	9285357	1
Deletion	Chr1	10116955	10116956	1
Deletion	Chr7	15020501	15020503	2
Deletion	Chr1	17186689	17186844	155
Deletion	Chr2	20640001	20717000	76999	2
Deletion	Chr4	21040687	21040688	1	OsKitaake04g115500
Deletion	Chr5	25628419	25628536	117
Deletion	Chr5	25925642	25925736	94
Deletion	Chr7	25934535	25934536	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8227899	Chr2	23429669	OsKitaake02g229500
Translocation	Chr9	8228171	Chr2	23430453
Translocation	Chr10	20130074	Chr6	19710138	OsKitaake10g152600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes