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| Mutant Information |
|---|
| Mutant Name | 703-4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 703-4 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15124505 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23439580 | G-C | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 26046226 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29573911 | T-G | Homo | INTRON | |
| SBS | Chr2 | 6399397 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9064631 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g113400 |
| SBS | Chr2 | 23508704 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24223506 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24223507 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24290228 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 24687627 | T-A | Homo | INTRON | |
| SBS | Chr5 | 3468322 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14569033 | G-A | Homo | INTRON | |
| SBS | Chr6 | 17615062 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 2119436 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 13597078 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27053009 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 27097329 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 2694884 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 5169341 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18963199 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 11177869 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23474086 | T-C | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 22561 | 22562 | 1 | |
| Deletion | Chr3 | 4089589 | 4089590 | 1 | |
| Deletion | Chr8 | 5902001 | 6116000 | 213999 | 17 |
| Deletion | Chr1 | 13104818 | 13104823 | 5 | |
| Deletion | Chr3 | 16739732 | 16739904 | 172 | |
| Deletion | Chr7 | 17515607 | 17515608 | 1 | |
| Deletion | Chr12 | 18930049 | 18930054 | 5 | OsKitaake12g139500 |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr1 | 23217911 | 23217915 | 4 | |
| Deletion | Chr11 | 24089884 | 24089885 | 1 | |
| Deletion | Chr6 | 25290001 | 25400000 | 109999 | 16 |
| Deletion | Chr11 | 27541328 | 27541398 | 70 | |
| Deletion | Chr7 | 27547060 | 27547065 | 5 | |
| Deletion | Chr5 | 28169791 | 28169793 | 2 | OsKitaake05g260800 |
| Deletion | Chr3 | 32465283 | 32465284 | 1 | OsKitaake03g343900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 1648606 | Chr3 | 759067 | |
| Translocation | Chr10 | 8614036 | Chr7 | 13904531 |