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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	703-5 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 703-5 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 13

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16355688 G-A Homo INTRON
SBS Chr1 22330687 G-T Hetero INTRON
SBS Chr2 36229859 C-T Homo INTRON
SBS Chr3 21068036 G-A Homo INTERGENIC
SBS Chr3 26542589 C-T Homo INTERGENIC
SBS Chr5 25759139 G-T Homo INTRON
SBS Chr6 28302244 G-A Homo UTR_5_PRIME
SBS Chr10 4774928 T-C Hetero INTERGENIC
SBS Chr11 2058074 A-G Homo INTRON
SBS Chr11 21407198 G-A Hetero INTERGENIC
SBS Chr11 28602870 C-T Homo INTERGENIC
SBS Chr12 9038944 G-T Homo UTR_3_PRIME
SBS Chr12 13873336 T-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1486969 1486970 1
Deletion Chr2 1946932 1946936 4
Deletion Chr2 1981328 1981341 13 OsKitaake02g030000
Deletion Chr1 2788794 2788795 1
Deletion Chr5 5375602 5375673 71
Deletion Chr9 5445955 5446045 90
Deletion Chr12 6840539 6840543 4
Deletion Chr11 6905896 6905897 1 OsKitaake11g079910
Deletion Chr7 8165312 8165403 91 OsKitaake07g089300
Deletion Chr12 11718044 11718045 1
Deletion Chr12 12821972 12821975 3
Deletion Chr4 13088028 13088152 124
Deletion Chr12 13851664 13851666 2
Deletion Chr10 14761419 14761421 2
Deletion Chr11 15165885 15165887 2
Deletion Chr5 16420001 16440000 19999
Deletion Chr10 20313533 20313534 1
Deletion Chr3 23860837 23860854 17

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26946419 26946422 2
Insertion Chr8 7323137 7323139 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8614049 Chr7 13904535

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16355688	G-A	Homo	INTRON
SBS	Chr1	22330687	G-T	Hetero	INTRON
SBS	Chr2	36229859	C-T	Homo	INTRON
SBS	Chr3	21068036	G-A	Homo	INTERGENIC
SBS	Chr3	26542589	C-T	Homo	INTERGENIC
SBS	Chr5	25759139	G-T	Homo	INTRON
SBS	Chr6	28302244	G-A	Homo	UTR_5_PRIME
SBS	Chr10	4774928	T-C	Hetero	INTERGENIC
SBS	Chr11	2058074	A-G	Homo	INTRON
SBS	Chr11	21407198	G-A	Hetero	INTERGENIC
SBS	Chr11	28602870	C-T	Homo	INTERGENIC
SBS	Chr12	9038944	G-T	Homo	UTR_3_PRIME
SBS	Chr12	13873336	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1486969	1486970	1
Deletion	Chr2	1946932	1946936	4
Deletion	Chr2	1981328	1981341	13	OsKitaake02g030000
Deletion	Chr1	2788794	2788795	1
Deletion	Chr5	5375602	5375673	71
Deletion	Chr9	5445955	5446045	90
Deletion	Chr12	6840539	6840543	4
Deletion	Chr11	6905896	6905897	1	OsKitaake11g079910
Deletion	Chr7	8165312	8165403	91	OsKitaake07g089300
Deletion	Chr12	11718044	11718045	1
Deletion	Chr12	12821972	12821975	3
Deletion	Chr4	13088028	13088152	124
Deletion	Chr12	13851664	13851666	2
Deletion	Chr10	14761419	14761421	2
Deletion	Chr11	15165885	15165887	2
Deletion	Chr5	16420001	16440000	19999
Deletion	Chr10	20313533	20313534	1
Deletion	Chr3	23860837	23860854	17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8614049	Chr7	13904535

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes