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Mutant Information

Mutant Name	704-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-1-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8546449	G-T	Hetero	INTERGENIC
SBS	Chr1	13612841	C-A	Homo	INTERGENIC
SBS	Chr1	13612843	C-T	Homo	INTERGENIC
SBS	Chr1	24893141	C-T	Homo	INTERGENIC
SBS	Chr1	31846018	G-A	Homo	INTERGENIC
SBS	Chr1	35385070	A-T	Homo	INTRON
SBS	Chr2	25465323	C-T	Hetero	INTERGENIC
SBS	Chr2	27601254	T-A	Homo	INTERGENIC
SBS	Chr3	36242919	C-T	Homo	INTERGENIC
SBS	Chr4	7057693	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g036000
SBS	Chr4	12724019	C-G	Homo	INTERGENIC
SBS	Chr5	14451828	G-A	Homo	INTERGENIC
SBS	Chr5	16935820	G-A	Homo	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	18776879	G-A	Homo	INTRON
SBS	Chr6	21078791	A-T	Homo	INTRON
SBS	Chr7	21176890	G-A	Homo	INTERGENIC
SBS	Chr7	25921480	T-A	Homo	INTRON
SBS	Chr7	26457091	A-G	Hetero	INTERGENIC
SBS	Chr8	3104561	A-G	Homo	INTERGENIC
SBS	Chr8	9410637	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	2500618	C-A	Homo	INTERGENIC
SBS	Chr11	5583960	C-G	Homo	INTERGENIC
SBS	Chr11	16283696	G-C	Hetero	INTERGENIC
SBS	Chr12	5390554	C-G	Homo	INTERGENIC
SBS	Chr12	6289949	C-A	Homo	INTERGENIC
SBS	Chr12	13929244	C-A	Homo	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr9	2737607	2737608	1
Deletion	Chr8	12513390	12513391	1	OsKitaake08g107000
Deletion	Chr2	13621554	13621555	1
Deletion	Chr7	17225474	17225574	100
Deletion	Chr1	24535431	24535432	1
Deletion	Chr5	26328017	26328019	2	OsKitaake05g232500
Deletion	Chr3	27154302	27154305	3

Insertions: 10

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr7	8659994	8659997	2
Insertion	Chr2	13851976	13851979	2
Insertion	Chr2	35328984	35328987	2
Insertion	Chr4	10454656	10454658	1
Insertion	Chr4	11035443	11035445	1
Insertion	Chr4	21162949	21162985	35
Insertion	Chr6	22207	22209	1
Insertion	Chr7	12020386	12020388	1
Insertion	Chr9	10068067	10068069	1
Insertion	Chr12	11707370	11707373	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4593140	5591371
Inversion	Chr10	5468533	5591365
Inversion	Chr10	5470799	5555619	OsKitaake10g038250
Inversion	Chr10	5534522	5555621
Inversion	Chr5	9631301	9650628
Inversion	Chr2	20316958	20329745

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6916418	Chr6	5683061
Translocation	Chr12	12915600	Chr1	5579995
Translocation	Chr8	17067390	Chr3	6741670	2
Translocation	Chr12	23186438	Chr2	24060651
Translocation	Chr12	23186440	Chr2	19555666
Translocation	Chr11	26779048	Chr10	1085789