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Mutant Information

Mutant Name	704-2 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-2 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7909625 G-T Homo INTERGENIC
SBS Chr1 7909626 G-T Homo INTERGENIC
SBS Chr1 8546449 G-T Homo INTERGENIC
SBS Chr1 15958269 C-T Hetero INTERGENIC
SBS Chr2 4662248 C-T Hetero INTERGENIC
SBS Chr2 9338196 C-T Homo INTERGENIC
SBS Chr2 21079452 T-A Hetero UTR_3_PRIME
SBS Chr2 35264795 C-T Hetero INTERGENIC
SBS Chr3 35020132 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g382600
SBS Chr4 3510943 C-G Hetero INTERGENIC
SBS Chr4 17454834 C-T Hetero INTERGENIC
SBS Chr4 23728438 G-A Homo INTRON
SBS Chr4 27630817 G-A Homo INTERGENIC
SBS Chr5 6495388 C-A Hetero INTERGENIC
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr6 11788698 C-T Homo INTERGENIC
SBS Chr6 21711980 T-A Hetero INTERGENIC
SBS Chr6 29980057 T-G Hetero INTERGENIC
SBS Chr7 6642187 T-A Homo NON_SYNONYMOUS_CODING OsKitaake07g076300
SBS Chr8 18881633 A-G Hetero INTERGENIC
SBS Chr9 14631167 C-G Hetero INTRON
SBS Chr9 17331645 A-T Hetero INTERGENIC
SBS Chr9 17950085 C-T Hetero UTR_3_PRIME
SBS Chr11 3010280 G-A Hetero INTERGENIC
SBS Chr11 10497434 G-T Hetero INTERGENIC
SBS Chr11 10497435 C-T Hetero INTERGENIC
SBS Chr12 5132461 T-G Hetero INTERGENIC
SBS Chr12 24430260 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20796 20797 1 2
Deletion Chr8 340340 340344 4
Deletion Chr10 1362737 1362738 1
Deletion Chr1 2501146 2501194 48
Deletion Chr7 3117294 3117419 125
Deletion Chr11 3914888 3914890 2
Deletion Chr1 7871951 7871955 4
Deletion Chr1 9457808 9457809 1
Deletion Chr3 9849990 9849991 1 OsKitaake03g134500
Deletion Chr5 12424107 12424108 1 2
Deletion Chr2 12864001 12876000 11999
Deletion Chr7 15669982 15669984 2
Deletion Chr9 16912451 16912520 69
Deletion Chr2 29914151 29914152 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17806016 17806022 5
Insertion Chr4 21162569 21162605 35
Insertion Chr5 12424107 12424109 1
Insertion Chr6 20796 20798 1
Insertion Chr11 8637653 8637728 74
Insertion Chr12 11659468 11659470 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 9397947 Chr2 12876193 OsKitaake03g127900
Translocation Chr9 10392826 Chr4 10517676
Translocation Chr9 10392835 Chr4 10518064
Translocation Chr8 13582642 Chr4 9661053
Translocation Chr6 21710743 Chr2 12863779 OsKitaake06g191400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7909625	G-T	Homo	INTERGENIC
SBS	Chr1	7909626	G-T	Homo	INTERGENIC
SBS	Chr1	8546449	G-T	Homo	INTERGENIC
SBS	Chr1	15958269	C-T	Hetero	INTERGENIC
SBS	Chr2	4662248	C-T	Hetero	INTERGENIC
SBS	Chr2	9338196	C-T	Homo	INTERGENIC
SBS	Chr2	21079452	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	35264795	C-T	Hetero	INTERGENIC
SBS	Chr3	35020132	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g382600
SBS	Chr4	3510943	C-G	Hetero	INTERGENIC
SBS	Chr4	17454834	C-T	Hetero	INTERGENIC
SBS	Chr4	23728438	G-A	Homo	INTRON
SBS	Chr4	27630817	G-A	Homo	INTERGENIC
SBS	Chr5	6495388	C-A	Hetero	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	11788698	C-T	Homo	INTERGENIC
SBS	Chr6	21711980	T-A	Hetero	INTERGENIC
SBS	Chr6	29980057	T-G	Hetero	INTERGENIC
SBS	Chr7	6642187	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g076300
SBS	Chr8	18881633	A-G	Hetero	INTERGENIC
SBS	Chr9	14631167	C-G	Hetero	INTRON
SBS	Chr9	17331645	A-T	Hetero	INTERGENIC
SBS	Chr9	17950085	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	3010280	G-A	Hetero	INTERGENIC
SBS	Chr11	10497434	G-T	Hetero	INTERGENIC
SBS	Chr11	10497435	C-T	Hetero	INTERGENIC
SBS	Chr12	5132461	T-G	Hetero	INTERGENIC
SBS	Chr12	24430260	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20796	20797	1	2
Deletion	Chr8	340340	340344	4
Deletion	Chr10	1362737	1362738	1
Deletion	Chr1	2501146	2501194	48
Deletion	Chr7	3117294	3117419	125
Deletion	Chr11	3914888	3914890	2
Deletion	Chr1	7871951	7871955	4
Deletion	Chr1	9457808	9457809	1
Deletion	Chr3	9849990	9849991	1	OsKitaake03g134500
Deletion	Chr5	12424107	12424108	1	2
Deletion	Chr2	12864001	12876000	11999
Deletion	Chr7	15669982	15669984	2
Deletion	Chr9	16912451	16912520	69
Deletion	Chr2	29914151	29914152	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	9397947	Chr2	12876193	OsKitaake03g127900
Translocation	Chr9	10392826	Chr4	10517676
Translocation	Chr9	10392835	Chr4	10518064
Translocation	Chr8	13582642	Chr4	9661053
Translocation	Chr6	21710743	Chr2	12863779	OsKitaake06g191400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes