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| Mutant Information |
|---|
| Mutant Name | 704-3 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 704-3 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8546449 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 39098272 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 12866593 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34243161 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4578822 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 10773494 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 16014913 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 23728438 | G-A | Homo | INTRON | |
| SBS | Chr5 | 10258765 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11788698 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21370611 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21711980 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29980057 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 6642187 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g076300 |
| SBS | Chr7 | 19431549 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 14631167 | C-G | Hetero | INTRON | |
| SBS | Chr9 | 17331645 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23386969 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10497434 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10497435 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3474922 | 3474923 | 1 | |
| Deletion | Chr11 | 4252300 | 4252301 | 1 | OsKitaake11g057100 |
| Deletion | Chr1 | 7871951 | 7871955 | 4 | |
| Deletion | Chr1 | 7906042 | 7906044 | 2 | |
| Deletion | Chr12 | 9369123 | 9369125 | 2 | |
| Deletion | Chr7 | 10111092 | 10111102 | 10 | |
| Deletion | Chr5 | 15467164 | 15467168 | 4 | |
| Deletion | Chr9 | 19558686 | 19558688 | 2 | |
| Deletion | Chr11 | 22966593 | 22966595 | 2 | OsKitaake11g182300 |
| Deletion | Chr5 | 23750031 | 23750032 | 1 | |
| Deletion | Chr8 | 28462825 | 28462832 | 7 | |
| Deletion | Chr4 | 30265010 | 30265021 | 11 | |
| Deletion | Chr1 | 36355234 | 36355235 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 318334 | 318337 | 2 | |
| Insertion | Chr2 | 35354679 | 35354681 | 1 | |
| Insertion | Chr8 | 8960664 | 8960673 | 8 | |
| Insertion | Chr8 | 9073214 | 9073218 | 3 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 9397946 | Chr2 | 12876192 | OsKitaake03g127900 |
| Translocation | Chr9 | 10392826 | Chr4 | 10517676 | |
| Translocation | Chr9 | 10392835 | Chr4 | 10518064 | |
| Translocation | Chr6 | 21710743 | Chr2 | 12863779 | OsKitaake06g191400 |
| Translocation | Chr11 | 26778897 | Chr10 | 1085880 |