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Mutant Information

Mutant Name	704-4-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-4-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39206038 A-G Hetero INTERGENIC
SBS Chr2 27601254 T-A Homo INTERGENIC
SBS Chr3 37287013 A-G Hetero INTERGENIC
SBS Chr4 25903340 T-C Hetero INTERGENIC
SBS Chr5 16935820 G-A Homo INTERGENIC
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr6 9666093 A-G Hetero INTERGENIC
SBS Chr6 11788698 C-T Hetero INTERGENIC
SBS Chr7 9818122 A-T Homo INTERGENIC
SBS Chr7 17908091 T-C Hetero INTERGENIC
SBS Chr7 21176890 G-A Hetero INTERGENIC
SBS Chr7 25921480 T-A Homo INTRON
SBS Chr8 3104561 A-G Homo INTERGENIC
SBS Chr9 19722637 G-A Homo INTERGENIC
SBS Chr9 22392146 A-T Homo INTERGENIC
SBS Chr10 13289794 C-T Homo INTERGENIC
SBS Chr11 5583960 C-G Hetero INTERGENIC
SBS Chr11 15087643 G-A Homo INTERGENIC
SBS Chr11 15087644 G-A Homo INTERGENIC
SBS Chr11 27041408 C-T Homo INTERGENIC
SBS Chr11 29351554 T-G Hetero INTERGENIC
SBS Chr12 6289949 C-A Homo INTERGENIC
SBS Chr12 13929244 C-A Homo INTERGENIC
SBS Chr12 14739652 C-T Hetero INTERGENIC
SBS Chr12 23302243 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20090 20091 1
Deletion Chr3 4841269 4841281 12
Deletion Chr1 5142394 5142397 3
Deletion Chr10 5591717 5591720 3
Deletion Chr8 11174824 11174825 1
Deletion Chr1 11788675 11788678 3
Deletion Chr7 12696564 12696566 2
Deletion Chr12 15076991 15076992 1
Deletion Chr4 17722892 17722893 1
Deletion Chr6 18566134 18566137 3
Deletion Chr12 21573019 21573022 3
Deletion Chr8 22768826 22768827 1
Deletion Chr7 23728562 23728563 1
Deletion Chr12 25470060 25470061 1
Deletion Chr3 27154302 27154305 3
Deletion Chr2 28088095 28088097 2
Deletion Chr1 30270769 30270773 4
Deletion Chr4 34052917 34052923 6
Deletion Chr1 34602299 34602301 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21158538 21158541 2
Insertion Chr2 12526801 12526805 3
Insertion Chr5 13028546 13028550 3
Insertion Chr5 10944141 10944143 1
Insertion Chr12 11660004 11660006 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4593142 5591371
Inversion Chr10 5468533 5591365
Inversion Chr10 5470799 5555619 OsKitaake10g038250
Inversion Chr10 5534522 5555621
Inversion Chr2 20316958 20329747

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 17067390 Chr3 6741670 2
Translocation Chr12 23186438 Chr2 24060651
Translocation Chr12 23186440 Chr2 19555666

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39206038	A-G	Hetero	INTERGENIC
SBS	Chr2	27601254	T-A	Homo	INTERGENIC
SBS	Chr3	37287013	A-G	Hetero	INTERGENIC
SBS	Chr4	25903340	T-C	Hetero	INTERGENIC
SBS	Chr5	16935820	G-A	Homo	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	9666093	A-G	Hetero	INTERGENIC
SBS	Chr6	11788698	C-T	Hetero	INTERGENIC
SBS	Chr7	9818122	A-T	Homo	INTERGENIC
SBS	Chr7	17908091	T-C	Hetero	INTERGENIC
SBS	Chr7	21176890	G-A	Hetero	INTERGENIC
SBS	Chr7	25921480	T-A	Homo	INTRON
SBS	Chr8	3104561	A-G	Homo	INTERGENIC
SBS	Chr9	19722637	G-A	Homo	INTERGENIC
SBS	Chr9	22392146	A-T	Homo	INTERGENIC
SBS	Chr10	13289794	C-T	Homo	INTERGENIC
SBS	Chr11	5583960	C-G	Hetero	INTERGENIC
SBS	Chr11	15087643	G-A	Homo	INTERGENIC
SBS	Chr11	15087644	G-A	Homo	INTERGENIC
SBS	Chr11	27041408	C-T	Homo	INTERGENIC
SBS	Chr11	29351554	T-G	Hetero	INTERGENIC
SBS	Chr12	6289949	C-A	Homo	INTERGENIC
SBS	Chr12	13929244	C-A	Homo	INTERGENIC
SBS	Chr12	14739652	C-T	Hetero	INTERGENIC
SBS	Chr12	23302243	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20090	20091	1
Deletion	Chr3	4841269	4841281	12
Deletion	Chr1	5142394	5142397	3
Deletion	Chr10	5591717	5591720	3
Deletion	Chr8	11174824	11174825	1
Deletion	Chr1	11788675	11788678	3
Deletion	Chr7	12696564	12696566	2
Deletion	Chr12	15076991	15076992	1
Deletion	Chr4	17722892	17722893	1
Deletion	Chr6	18566134	18566137	3
Deletion	Chr12	21573019	21573022	3
Deletion	Chr8	22768826	22768827	1
Deletion	Chr7	23728562	23728563	1
Deletion	Chr12	25470060	25470061	1
Deletion	Chr3	27154302	27154305	3
Deletion	Chr2	28088095	28088097	2
Deletion	Chr1	30270769	30270773	4
Deletion	Chr4	34052917	34052923	6
Deletion	Chr1	34602299	34602301	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4593142	5591371
Inversion	Chr10	5468533	5591365
Inversion	Chr10	5470799	5555619	OsKitaake10g038250
Inversion	Chr10	5534522	5555621
Inversion	Chr2	20316958	20329747

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes