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| Mutant Information |
|---|
| Mutant Name | 704-5 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 704-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4488313 | G-A | Hetero | SPLICE_SITE_DONOR | OsKitaake01g059700 |
| SBS | Chr1 | 8546449 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39098272 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16673320 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21079452 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 27601254 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 6073752 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g080000 |
| SBS | Chr6 | 10389318 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g117600 |
| SBS | Chr6 | 29980057 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 6642187 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g076300 |
| SBS | Chr8 | 152776 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1610892 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g009200 |
| SBS | Chr9 | 14631167 | C-G | Homo | INTRON | |
| SBS | Chr9 | 17331645 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10497434 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10497435 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13072049 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6289949 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13929244 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24430260 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 26692668 | C-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 340340 | 340344 | 4 | |
| Deletion | Chr11 | 3914888 | 3914890 | 2 | |
| Deletion | Chr3 | 8143087 | 8143089 | 2 | OsKitaake03g112800 |
| Deletion | Chr1 | 9457808 | 9457809 | 1 | |
| Deletion | Chr3 | 9692393 | 9692397 | 4 | |
| Deletion | Chr9 | 11611164 | 11611182 | 18 | |
| Deletion | Chr1 | 13644121 | 13644122 | 1 | |
| Deletion | Chr2 | 14598552 | 14598557 | 5 | |
| Deletion | Chr1 | 17199878 | 17200043 | 165 | |
| Deletion | Chr2 | 18283929 | 18283930 | 1 | |
| Deletion | Chr6 | 19166727 | 19166729 | 2 | OsKitaake06g173100 |
| Deletion | Chr11 | 19505999 | 19506001 | 2 | |
| Deletion | Chr8 | 21359172 | 21359174 | 2 | OsKitaake08g160200 |
| Deletion | Chr11 | 22966593 | 22966595 | 2 | OsKitaake11g182300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 12355960 | 12355962 | 1 | |
| Insertion | Chr12 | 26049535 | 26049537 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 10153005 | 10168170 | |
| Inversion | Chr6 | 10153010 | 10168172 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 4431232 | Chr9 | 210600 | |
| Translocation | Chr10 | 8659028 | Chr1 | 17293163 | OsKitaake10g053166 |
| Translocation | Chr9 | 10392826 | Chr4 | 10517676 | |
| Translocation | Chr9 | 10392835 | Chr4 | 10518064 | |
| Translocation | Chr9 | 16932191 | Chr6 | 5939307 | 2 |