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Mutant Information

Mutant Name	705-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 705-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10366853 A-G Homo INTRON
SBS Chr1 18198338 G-T Homo INTERGENIC
SBS Chr1 20675625 C-T Homo UTR_3_PRIME
SBS Chr2 5342435 C-A Homo INTRON
SBS Chr2 17248971 A-T Hetero INTERGENIC
SBS Chr3 21555600 A-T Homo INTERGENIC
SBS Chr4 20458454 C-T Hetero INTERGENIC
SBS Chr4 34223199 T-C Homo INTERGENIC
SBS Chr5 8722170 A-G Homo INTERGENIC
SBS Chr5 10561084 A-T Homo INTERGENIC
SBS Chr5 14084925 G-A Hetero INTERGENIC
SBS Chr5 15249726 C-A Homo UTR_3_PRIME
SBS Chr5 28373214 T-G Hetero INTRON
SBS Chr6 11032403 G-A Homo INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr6 19028260 C-T Hetero INTERGENIC
SBS Chr6 20242537 C-T Hetero INTERGENIC
SBS Chr6 20242538 G-T Hetero INTERGENIC
SBS Chr6 21716373 A-G Hetero INTERGENIC
SBS Chr6 22279190 T-C Hetero INTERGENIC
SBS Chr6 29841130 C-T Homo INTERGENIC
SBS Chr7 9672145 G-C Homo INTERGENIC
SBS Chr7 26214100 A-T Homo INTERGENIC
SBS Chr8 3015563 T-C Homo INTERGENIC
SBS Chr8 10648914 T-C Hetero INTERGENIC
SBS Chr8 11940852 G-A Hetero INTERGENIC
SBS Chr8 11940853 G-A Hetero INTERGENIC
SBS Chr8 14051320 T-G Hetero INTERGENIC
SBS Chr8 16868816 C-T Hetero INTERGENIC
SBS Chr8 20117699 G-A Hetero INTERGENIC
SBS Chr8 29073239 T-C Homo UTR_5_PRIME
SBS Chr9 3195506 C-T Homo INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 6609201 T-A Homo INTRON
SBS Chr9 14629146 C-T Hetero INTRON
SBS Chr10 8144595 A-G Hetero INTERGENIC
SBS Chr10 17940139 C-T Hetero INTERGENIC
SBS Chr11 9985918 G-T Hetero INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr11 21883565 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g173000
SBS Chr11 24337151 C-A Homo INTERGENIC
SBS Chr11 26899557 T-C Hetero INTERGENIC
SBS Chr12 355537 G-T Hetero INTERGENIC
SBS Chr12 2406663 C-T Hetero INTERGENIC
SBS Chr12 8635097 T-C Homo INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 19077528 C-G Homo INTERGENIC
SBS Chr12 24521217 G-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1925876 1925882 6 OsKitaake05g021600
Deletion Chr5 3003801 3003802 1
Deletion Chr3 4750436 4750444 8
Deletion Chr8 4979658 4979659 1
Deletion Chr8 6949879 6949880 1
Deletion Chr9 7681598 7681708 110
Deletion Chr12 7683802 7683804 2 OsKitaake12g083200
Deletion Chr1 8299975 8299977 2 OsKitaake01g103100
Deletion Chr1 10357064 10357069 5
Deletion Chr11 10697775 10697864 89
Deletion Chr5 13738991 13738992 1 OsKitaake05g106400
Deletion Chr8 16295694 16295696 2
Deletion Chr5 16307085 16307282 197
Deletion Chr3 16652864 16652955 91
Deletion Chr1 16701117 16701124 7
Deletion Chr3 18314244 18314248 4
Deletion Chr10 19841335 19841336 1
Deletion Chr3 20033081 20033534 453
Deletion Chr5 21378777 21378845 68
Deletion Chr1 29511223 29511495 272
Deletion Chr5 30121645 30121646 1
Deletion Chr2 32911817 32911824 7
Deletion Chr1 36476759 36476766 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 17866340 17866344 3
Insertion Chr6 30054479 30054481 1
Insertion Chr7 17162609 17162611 1
Insertion Chr10 5415995 5415997 1
Insertion Chr12 11693872 11693874 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 23500192 23678618 OsKitaake12g188500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10366853	A-G	Homo	INTRON
SBS	Chr1	18198338	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr2	5342435	C-A	Homo	INTRON
SBS	Chr2	17248971	A-T	Hetero	INTERGENIC
SBS	Chr3	21555600	A-T	Homo	INTERGENIC
SBS	Chr4	20458454	C-T	Hetero	INTERGENIC
SBS	Chr4	34223199	T-C	Homo	INTERGENIC
SBS	Chr5	8722170	A-G	Homo	INTERGENIC
SBS	Chr5	10561084	A-T	Homo	INTERGENIC
SBS	Chr5	14084925	G-A	Hetero	INTERGENIC
SBS	Chr5	15249726	C-A	Homo	UTR_3_PRIME
SBS	Chr5	28373214	T-G	Hetero	INTRON
SBS	Chr6	11032403	G-A	Homo	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr6	19028260	C-T	Hetero	INTERGENIC
SBS	Chr6	20242537	C-T	Hetero	INTERGENIC
SBS	Chr6	20242538	G-T	Hetero	INTERGENIC
SBS	Chr6	21716373	A-G	Hetero	INTERGENIC
SBS	Chr6	22279190	T-C	Hetero	INTERGENIC
SBS	Chr6	29841130	C-T	Homo	INTERGENIC
SBS	Chr7	9672145	G-C	Homo	INTERGENIC
SBS	Chr7	26214100	A-T	Homo	INTERGENIC
SBS	Chr8	3015563	T-C	Homo	INTERGENIC
SBS	Chr8	10648914	T-C	Hetero	INTERGENIC
SBS	Chr8	11940852	G-A	Hetero	INTERGENIC
SBS	Chr8	11940853	G-A	Hetero	INTERGENIC
SBS	Chr8	14051320	T-G	Hetero	INTERGENIC
SBS	Chr8	16868816	C-T	Hetero	INTERGENIC
SBS	Chr8	20117699	G-A	Hetero	INTERGENIC
SBS	Chr8	29073239	T-C	Homo	UTR_5_PRIME
SBS	Chr9	3195506	C-T	Homo	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	6609201	T-A	Homo	INTRON
SBS	Chr9	14629146	C-T	Hetero	INTRON
SBS	Chr10	8144595	A-G	Hetero	INTERGENIC
SBS	Chr10	17940139	C-T	Hetero	INTERGENIC
SBS	Chr11	9985918	G-T	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	21883565	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g173000
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr11	26899557	T-C	Hetero	INTERGENIC
SBS	Chr12	355537	G-T	Hetero	INTERGENIC
SBS	Chr12	2406663	C-T	Hetero	INTERGENIC
SBS	Chr12	8635097	T-C	Homo	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	19077528	C-G	Homo	INTERGENIC
SBS	Chr12	24521217	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1925876	1925882	6	OsKitaake05g021600
Deletion	Chr5	3003801	3003802	1
Deletion	Chr3	4750436	4750444	8
Deletion	Chr8	4979658	4979659	1
Deletion	Chr8	6949879	6949880	1
Deletion	Chr9	7681598	7681708	110
Deletion	Chr12	7683802	7683804	2	OsKitaake12g083200
Deletion	Chr1	8299975	8299977	2	OsKitaake01g103100
Deletion	Chr1	10357064	10357069	5
Deletion	Chr11	10697775	10697864	89
Deletion	Chr5	13738991	13738992	1	OsKitaake05g106400
Deletion	Chr8	16295694	16295696	2
Deletion	Chr5	16307085	16307282	197
Deletion	Chr3	16652864	16652955	91
Deletion	Chr1	16701117	16701124	7
Deletion	Chr3	18314244	18314248	4
Deletion	Chr10	19841335	19841336	1
Deletion	Chr3	20033081	20033534	453
Deletion	Chr5	21378777	21378845	68
Deletion	Chr1	29511223	29511495	272
Deletion	Chr5	30121645	30121646	1
Deletion	Chr2	32911817	32911824	7
Deletion	Chr1	36476759	36476766	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	23500192	23678618	OsKitaake12g188500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes