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| Mutant Information |
|---|
| Mutant Name | 705-2 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 705-2 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10366853 | A-G | Homo | INTRON | |
| SBS | Chr1 | 18198338 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 18420805 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23124871 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21555600 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27414298 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1886302 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18828508 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 8722170 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8597522 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16565062 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19028260 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 20242537 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 20242538 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21716373 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 28589791 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g262600 |
| SBS | Chr7 | 26214100 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 1483705 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 10648914 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 11940852 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11940853 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 29073239 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 14629146 | C-T | Homo | INTRON | |
| SBS | Chr10 | 627237 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 774045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8275703 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 19229841 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 4333369 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7514643 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19093334 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21883565 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g173000 |
| SBS | Chr12 | 2406663 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 8635097 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19077528 | C-G | Homo | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1925876 | 1925882 | 6 | OsKitaake05g021600 |
| Deletion | Chr4 | 2100382 | 2100396 | 14 | |
| Deletion | Chr11 | 2752625 | 2752839 | 214 | |
| Deletion | Chr9 | 3119885 | 3120032 | 147 | |
| Deletion | Chr11 | 5552313 | 5552315 | 2 | |
| Deletion | Chr4 | 5708200 | 5708568 | 368 | |
| Deletion | Chr9 | 5716447 | 5716538 | 91 | |
| Deletion | Chr11 | 6256767 | 6257237 | 470 | |
| Deletion | Chr9 | 6327257 | 6327263 | 6 | |
| Deletion | Chr12 | 7683802 | 7683804 | 2 | OsKitaake12g083200 |
| Deletion | Chr1 | 8299975 | 8299977 | 2 | OsKitaake01g103100 |
| Deletion | Chr1 | 8458372 | 8458384 | 12 | OsKitaake01g105300 |
| Deletion | Chr1 | 10357064 | 10357069 | 5 | |
| Deletion | Chr6 | 13609776 | 13609780 | 4 | |
| Deletion | Chr7 | 16843498 | 16843499 | 1 | |
| Deletion | Chr4 | 22342285 | 22342286 | 1 | |
| Deletion | Chr6 | 26673352 | 26673354 | 2 | |
| Deletion | Chr3 | 27547373 | 27547375 | 2 | |
| Deletion | Chr4 | 29309424 | 29309435 | 11 | |
| Deletion | Chr2 | 32911817 | 32911824 | 7 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 28542538 | 28542540 | 1 | |
| Insertion | Chr9 | 15121259 | 15121262 | 2 | |
| Insertion | Chr11 | 27281163 | 27281166 | 2 | |
| Insertion | Chr2 | 27072373 | 27072375 | 1 | |
| Insertion | Chr5 | 22283061 | 22283063 | 1 | OsKitaake05g182200  |
| Insertion | Chr11 | 17135318 | 17135320 | 1 | OsKitaake11g133750 |