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| Mutant Information |
|---|
| Mutant Name | 705-3 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 705-3 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10366853 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 44280250 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20317393 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26012888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18828508 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 34223199 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6682980 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8722170 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 10561084 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13530980 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 19028260 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 20242537 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 20242538 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 21716373 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 29841130 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6419449 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9672145 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 26214100 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29111868 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 29111869 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 29431483 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 2714210 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3015563 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12969800 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 29073239 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 3195506 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 6609201 | T-A | Homo | INTRON | |
| SBS | Chr10 | 627237 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8144595 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 4333369 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7514643 | T-C | Homo | INTRON | |
| SBS | Chr11 | 20793645 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr12 | 6485634 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8635097 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 9702882 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24521217 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 86160 | 86161 | 1 | |
| Deletion | Chr12 | 7683802 | 7683804 | 2 | OsKitaake12g083200 |
| Deletion | Chr7 | 7970442 | 7970443 | 1 | |
| Deletion | Chr3 | 10306057 | 10306058 | 1 | |
| Deletion | Chr2 | 10417263 | 10417265 | 2 | |
| Deletion | Chr12 | 16621001 | 16682000 | 60999 | OsKitaake12g125100 |
| Deletion | Chr12 | 16685001 | 16826000 | 140999 | 3 |
| Deletion | Chr4 | 20520892 | 20520893 | 1 | OsKitaake04g110800 |
| Deletion | Chr3 | 26841799 | 26841801 | 2 | |
| Deletion | Chr3 | 27547373 | 27547375 | 2 | |
| Deletion | Chr5 | 27823286 | 27823287 | 1 | |
| Deletion | Chr4 | 29309424 | 29309435 | 11 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13756014 | 13756016 | 1 | |
| Insertion | Chr5 | 30232136 | 30232144 | 7 | |
| Insertion | Chr8 | 12243254 | 12243256 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 16621797 | 17230817 | |
| Inversion | Chr12 | 17230350 | 18067107 | |
| Inversion | Chr12 | 17230827 | 18067109 | |
| Inversion | Chr12 | 23500189 | 23678611 | OsKitaake12g188500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 373044 | Chr11 | 214010 | |
| Translocation | Chr12 | 11998964 | Chr5 | 9926188 |