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Mutant Information

Mutant Name	705-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 705-6 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11243872 G-A Hetero INTERGENIC
SBS Chr1 15063191 G-A Hetero INTERGENIC
SBS Chr1 18198338 G-T Homo INTERGENIC
SBS Chr1 20675625 C-T Homo UTR_3_PRIME
SBS Chr1 25057619 A-T Homo INTERGENIC
SBS Chr1 25677257 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g249400
SBS Chr1 34584952 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 38673117 C-T Hetero INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 2846156 C-T Hetero INTERGENIC
SBS Chr2 14642454 G-T Homo INTERGENIC
SBS Chr2 27278847 G-A Homo INTERGENIC
SBS Chr3 6458542 G-T Homo UTR_3_PRIME
SBS Chr4 5876381 C-T Homo INTERGENIC
SBS Chr4 28471062 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 23105048 G-A Homo INTERGENIC
SBS Chr6 800806 A-T Hetero INTERGENIC
SBS Chr6 17826775 A-G Homo INTERGENIC
SBS Chr6 26632894 C-T Homo INTERGENIC
SBS Chr7 9672145 G-C Hetero INTERGENIC
SBS Chr7 12645858 G-A Hetero INTERGENIC
SBS Chr7 22175462 C-T Homo INTERGENIC
SBS Chr8 5959789 A-C Hetero SYNONYMOUS_CODING
SBS Chr8 8163792 T-C Homo INTRON
SBS Chr8 28600963 C-G Homo INTERGENIC
SBS Chr8 28703266 A-G Homo INTRON
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr10 627237 C-T Homo INTERGENIC
SBS Chr10 12583145 T-C Homo INTERGENIC
SBS Chr11 11796137 G-A Hetero INTERGENIC
SBS Chr11 24337151 C-A Homo INTERGENIC
SBS Chr12 3722676 A-T Homo INTRON
SBS Chr12 4423287 G-C Homo INTERGENIC
SBS Chr12 8749689 A-G Homo INTERGENIC
SBS Chr12 17878821 C-A Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1423869 1423873 4
Deletion Chr4 2100382 2100396 14
Deletion Chr9 2602346 2602349 3
Deletion Chr9 3367596 3367599 3
Deletion Chr8 4735996 4736121 125
Deletion Chr1 6823001 6839000 15999 3
Deletion Chr2 6873938 6873956 18
Deletion Chr4 10335753 10335754 1
Deletion Chr10 14157590 14157591 1
Deletion Chr11 15433029 15433032 3
Deletion Chr6 15466822 15466825 3
Deletion Chr5 15681001 15751000 69999 8
Deletion Chr5 15754001 15984000 229999 13
Deletion Chr2 17120819 17120822 3
Deletion Chr12 17186345 17186346 1
Deletion Chr4 18274733 18274737 4
Deletion Chr9 19998061 19998062 1
Deletion Chr2 26679540 26679546 6
Deletion Chr7 26794800 26794803 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8033005 8033007 1
Insertion Chr10 20063653 20063657 3
Insertion Chr4 21162949 21162985 35
Insertion Chr5 30229879 30229881 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6673954 6823453
Inversion Chr1 6673971 6839231
Inversion Chr5 15670455 16242982 2
Inversion Chr5 15984149 16242986 OsKitaake05g124300

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3384314 Chr5 15163987
Translocation Chr11 3384381 Chr5 15165770
Translocation Chr5 16812354 Chr1 39064184 OsKitaake01g419300
Translocation Chr5 16813223 Chr1 40174339
Translocation Chr12 17178890 Chr1 14857043 OsKitaake01g141550
Translocation Chr12 23612674 Chr5 1233664 OsKitaake12g189600
Translocation Chr4 26872376 Chr3 3742648 OsKitaake04g194700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11243872	G-A	Hetero	INTERGENIC
SBS	Chr1	15063191	G-A	Hetero	INTERGENIC
SBS	Chr1	18198338	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr1	25057619	A-T	Homo	INTERGENIC
SBS	Chr1	25677257	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g249400
SBS	Chr1	34584952	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	38673117	C-T	Hetero	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	2846156	C-T	Hetero	INTERGENIC
SBS	Chr2	14642454	G-T	Homo	INTERGENIC
SBS	Chr2	27278847	G-A	Homo	INTERGENIC
SBS	Chr3	6458542	G-T	Homo	UTR_3_PRIME
SBS	Chr4	5876381	C-T	Homo	INTERGENIC
SBS	Chr4	28471062	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23105048	G-A	Homo	INTERGENIC
SBS	Chr6	800806	A-T	Hetero	INTERGENIC
SBS	Chr6	17826775	A-G	Homo	INTERGENIC
SBS	Chr6	26632894	C-T	Homo	INTERGENIC
SBS	Chr7	9672145	G-C	Hetero	INTERGENIC
SBS	Chr7	12645858	G-A	Hetero	INTERGENIC
SBS	Chr7	22175462	C-T	Homo	INTERGENIC
SBS	Chr8	5959789	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8163792	T-C	Homo	INTRON
SBS	Chr8	28600963	C-G	Homo	INTERGENIC
SBS	Chr8	28703266	A-G	Homo	INTRON
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr10	627237	C-T	Homo	INTERGENIC
SBS	Chr10	12583145	T-C	Homo	INTERGENIC
SBS	Chr11	11796137	G-A	Hetero	INTERGENIC
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr12	3722676	A-T	Homo	INTRON
SBS	Chr12	4423287	G-C	Homo	INTERGENIC
SBS	Chr12	8749689	A-G	Homo	INTERGENIC
SBS	Chr12	17878821	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1423869	1423873	4
Deletion	Chr4	2100382	2100396	14
Deletion	Chr9	2602346	2602349	3
Deletion	Chr9	3367596	3367599	3
Deletion	Chr8	4735996	4736121	125
Deletion	Chr1	6823001	6839000	15999	3
Deletion	Chr2	6873938	6873956	18
Deletion	Chr4	10335753	10335754	1
Deletion	Chr10	14157590	14157591	1
Deletion	Chr11	15433029	15433032	3
Deletion	Chr6	15466822	15466825	3
Deletion	Chr5	15681001	15751000	69999	8
Deletion	Chr5	15754001	15984000	229999	13
Deletion	Chr2	17120819	17120822	3
Deletion	Chr12	17186345	17186346	1
Deletion	Chr4	18274733	18274737	4
Deletion	Chr9	19998061	19998062	1
Deletion	Chr2	26679540	26679546	6
Deletion	Chr7	26794800	26794803	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6673954	6823453
Inversion	Chr1	6673971	6839231
Inversion	Chr5	15670455	16242982	2
Inversion	Chr5	15984149	16242986	OsKitaake05g124300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes