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Mutant Information

Mutant Name	705-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 705-7 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2871398	T-C	Hetero	INTERGENIC
SBS	Chr1	10366853	A-G	Homo	INTRON
SBS	Chr1	14975575	G-A	Hetero	INTERGENIC
SBS	Chr1	18198338	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr1	28962683	G-A	Homo	INTERGENIC
SBS	Chr3	23539884	G-A	Hetero	INTERGENIC
SBS	Chr4	18828508	T-C	Homo	INTRON
SBS	Chr4	34223199	T-C	Hetero	INTERGENIC
SBS	Chr5	8722170	A-G	Homo	INTERGENIC
SBS	Chr5	10561084	A-T	Hetero	INTERGENIC
SBS	Chr5	18609393	G-A	Hetero	INTERGENIC
SBS	Chr5	21424058	C-A	Hetero	INTERGENIC
SBS	Chr6	10363201	A-G	Homo	INTERGENIC
SBS	Chr6	13530980	T-G	Homo	INTERGENIC
SBS	Chr6	22279190	T-C	Homo	INTERGENIC
SBS	Chr6	28589791	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g262600
SBS	Chr7	26214100	A-T	Homo	INTERGENIC
SBS	Chr7	29111868	C-T	Hetero	INTERGENIC
SBS	Chr7	29111869	A-T	Hetero	INTERGENIC
SBS	Chr8	10648914	T-C	Homo	INTERGENIC
SBS	Chr8	11940852	G-A	Homo	INTERGENIC
SBS	Chr8	11940853	G-A	Homo	INTERGENIC
SBS	Chr8	29073239	T-C	Hetero	UTR_5_PRIME
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14629146	C-T	Homo	INTRON
SBS	Chr10	8144595	A-G	Homo	INTERGENIC
SBS	Chr11	4333369	T-A	Hetero	INTERGENIC
SBS	Chr11	7514643	T-C	Homo	INTRON
SBS	Chr11	11796137	G-A	Hetero	INTERGENIC
SBS	Chr11	21883565	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g173000
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr12	2406663	C-T	Homo	INTERGENIC
SBS	Chr12	7313545	G-A	Hetero	INTERGENIC
SBS	Chr12	8635097	T-C	Hetero	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20692	21044	352
Deletion	Chr6	88990	88991	1
Deletion	Chr2	866050	866051	1
Deletion	Chr5	1925876	1925882	6	OsKitaake05g021600
Deletion	Chr9	6327257	6327263	6
Deletion	Chr1	7504471	7504477	6
Deletion	Chr1	8458372	8458384	12	OsKitaake01g105300
Deletion	Chr5	10304566	10304567	1
Deletion	Chr3	10306057	10306058	1
Deletion	Chr8	10787850	10787942	92
Deletion	Chr7	11984659	11984660	1
Deletion	Chr5	13738991	13738992	1	OsKitaake05g106400
Deletion	Chr12	16619001	16682000	62999	OsKitaake12g125100
Deletion	Chr12	16692001	16730000	37999	2
Deletion	Chr1	16701117	16701124	7
Deletion	Chr12	16741001	16821000	79999	OsKitaake12g125433
Deletion	Chr8	19525016	19525029	13
Deletion	Chr4	22342285	22342286	1
Deletion	Chr3	25333564	25333876	312
Deletion	Chr6	26673352	26673354	2
Deletion	Chr4	27569584	27569585	1
Deletion	Chr4	29309424	29309435	11
Deletion	Chr1	36476759	36476766	7

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr6	28542538	28542540	1
Insertion	Chr12	6903938	6903941	2
Insertion	Chr3	20036001	20036003	1
Insertion	Chr3	29264111	29264113	1
Insertion	Chr5	30231639	30231641	1
Insertion	Chr6	6994	6996	1
Insertion	Chr7	10588958	10588960	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6838580	7019123	OsKitaake06g088600