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| Mutant Information |
|---|
| Mutant Name | 706-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 706-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3966993 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 7551696 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 16809452 | C-A | Homo | INTRON | |
| SBS | Chr2 | 16968163 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24148466 | A-T | Homo | INTRON | |
| SBS | Chr3 | 8474513 | G-T | Homo | INTRON | |
| SBS | Chr3 | 8474514 | A-T | Homo | INTRON | |
| SBS | Chr4 | 1574352 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 35255706 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 9029861 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20594645 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21379537 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 1654979 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 5027019 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 8316640 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10793780 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11651974 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23829604 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 9999190 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5377385 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5927928 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 23783837 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23783845 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24167514 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24167515 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24167519 | G-T | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2330011 | 2330023 | 12 | |
| Deletion | Chr3 | 2907316 | 2907317 | 1 | |
| Deletion | Chr5 | 4587021 | 4587022 | 1 | OsKitaake05g053100 |
| Deletion | Chr3 | 7846252 | 7846255 | 3 | |
| Deletion | Chr7 | 7941766 | 7941768 | 2 | |
| Deletion | Chr5 | 9673857 | 9673865 | 8 | |
| Deletion | Chr10 | 11710123 | 11710125 | 2 | OsKitaake10g070100 |
| Deletion | Chr1 | 14200367 | 14200372 | 5 | |
| Deletion | Chr4 | 19408014 | 19408016 | 2 | |
| Deletion | Chr5 | 20826185 | 20826186 | 1 | |
| Deletion | Chr1 | 21788083 | 21788089 | 6 | |
| Deletion | Chr12 | 24266043 | 24266046 | 3 | OsKitaake12g195200 |
| Deletion | Chr8 | 24535069 | 24535072 | 3 | |
| Deletion | Chr11 | 24857658 | 24857666 | 8 | |
| Deletion | Chr1 | 26198934 | 26198939 | 5 | |
| Deletion | Chr11 | 26431359 | 26431364 | 5 | OsKitaake11g214900 |
| Deletion | Chr3 | 27376758 | 27376759 | 1 | OsKitaake03g282400 |
| Deletion | Chr5 | 28779787 | 28779789 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 23399614 | 23399618 | 3 | |
| Insertion | Chr7 | 22848895 | 22848898 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 13406859 | 13839036 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 29049014 | Chr2 | 18784765 | 2 |
| Translocation | Chr8 | 29049045 | Chr2 | 18783693 | OsKitaake08g251900 |