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| Mutant Information |
|---|
| Mutant Name | 706-2 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 706-2 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2575174 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 3966993 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 7551696 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 9811922 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 16809452 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 17310411 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 20218114 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 22005518 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36090900 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 30671062 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 5038863 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 8474513 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 8474514 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 20089003 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20089004 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22594207 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7603119 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13087714 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35255706 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 9029861 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1783469 | A-T | Homo | INTRON | |
| SBS | Chr7 | 2848548 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9163102 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14842165 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 12139537 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14452956 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13392080 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23783837 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23783845 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24640350 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g200000 |
| SBS | Chr12 | 26407043 | A-C | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2466313 | 2466315 | 2 | |
| Deletion | Chr3 | 10505746 | 10505747 | 1 | |
| Deletion | Chr10 | 11710123 | 11710125 | 2 | OsKitaake10g070100 |
| Deletion | Chr6 | 12643066 | 12643067 | 1 | |
| Deletion | Chr3 | 12810387 | 12810392 | 5 | |
| Deletion | Chr9 | 13544822 | 13544829 | 7 | |
| Deletion | Chr8 | 13976631 | 13976632 | 1 | OsKitaake08g111000 |
| Deletion | Chr8 | 18729813 | 18729823 | 10 | |
| Deletion | Chr4 | 19408014 | 19408016 | 2 | |
| Deletion | Chr11 | 20676876 | 20676877 | 1 | |
| Deletion | Chr5 | 20826185 | 20826186 | 1 | |
| Deletion | Chr8 | 24535069 | 24535072 | 3 | |
| Deletion | Chr11 | 24857658 | 24857666 | 8 | |
| Deletion | Chr1 | 26198934 | 26198939 | 5 | |
| Deletion | Chr11 | 26431359 | 26431364 | 5 | OsKitaake11g214900 |
| Deletion | Chr5 | 28779787 | 28779789 | 2 | |
| Deletion | Chr1 | 30069215 | 30069219 | 4 | |
| Deletion | Chr3 | 37546283 | 37546287 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 34956465 | 34956468 | 2 | |
| Insertion | Chr7 | 10004433 | 10004436 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 2911760 | Chr3 | 25500219 | OsKitaake03g269300 |
| Translocation | Chr11 | 2912566 | Chr3 | 25500228 | OsKitaake03g269300 |