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| Mutant Information |
|---|
| Mutant Name | 707-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 707-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6638216 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 9996784 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29213354 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 5054737 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28050967 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 35808966 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 4131095 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19960569 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16875286 | G-T | Homo | INTRON | |
| SBS | Chr4 | 19430891 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 23775910 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g150400 |
| SBS | Chr4 | 23775913 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g150400 |
| SBS | Chr4 | 23778899 | A-G | Homo | INTRON | |
| SBS | Chr5 | 7322623 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g073500 |
| SBS | Chr5 | 17712092 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13171666 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14286230 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7604103 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12030231 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 27716473 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 28365942 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 1924871 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 5947082 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8079769 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18791945 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14403815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15934916 | C-G | Hetero | INTRON | |
| SBS | Chr12 | 9611462 | G-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1423020 | 1423145 | 125 | |
| Deletion | Chr11 | 1907762 | 1907775 | 13 | |
| Deletion | Chr4 | 2835049 | 2835053 | 4 | |
| Deletion | Chr6 | 6065224 | 6065226 | 2 | OsKitaake06g079800 |
| Deletion | Chr2 | 13094657 | 13094730 | 73 | |
| Deletion | Chr11 | 14875001 | 14992000 | 116999 | 5 |
| Deletion | Chr8 | 17980695 | 17980696 | 1 | |
| Deletion | Chr3 | 20035146 | 20035300 | 154 | |
| Deletion | Chr9 | 20561113 | 20561116 | 3 | |
| Deletion | Chr10 | 21950368 | 21950372 | 4 | |
| Deletion | Chr8 | 25865015 | 25865019 | 4 | |
| Deletion | Chr11 | 26780001 | 26794000 | 13999 | 2 |
| Deletion | Chr4 | 34212244 | 34212251 | 7 | |
| Deletion | Chr1 | 37600951 | 37600952 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 11037064 | 11037067 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 14879909 | 15046427 | |
| Inversion | Chr11 | 14991448 | 15046443 |