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Mutant Information

Mutant Name	707-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5195187 T-C Homo INTRON
SBS Chr1 12710197 G-A Hetero INTERGENIC
SBS Chr1 17648459 C-T Hetero INTERGENIC
SBS Chr1 29213354 G-C Homo INTERGENIC
SBS Chr1 37228733 G-A Homo INTERGENIC
SBS Chr2 1559848 C-T Homo INTERGENIC
SBS Chr4 16875286 G-T Homo INTRON
SBS Chr4 19430891 G-A Homo INTERGENIC
SBS Chr5 7872928 T-C Hetero INTERGENIC
SBS Chr5 17712092 G-A Homo INTERGENIC
SBS Chr8 11147054 T-C Hetero INTERGENIC
SBS Chr8 22850908 G-A Hetero INTERGENIC
SBS Chr8 27716473 G-C Hetero UTR_3_PRIME
SBS Chr8 28365942 T-C Hetero INTRON
SBS Chr9 1924871 C-A Homo INTERGENIC
SBS Chr9 19245343 C-T Homo INTERGENIC
SBS Chr10 5947082 C-T Homo INTERGENIC
SBS Chr10 17969005 G-A Hetero INTERGENIC
SBS Chr11 16574878 A-G Homo INTERGENIC
SBS Chr11 27642788 A-G Hetero INTERGENIC
SBS Chr12 7125651 T-G Homo NON_SYNONYMOUS_CODING OsKitaake12g079800
SBS Chr12 20506377 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 798421 798429 8
Deletion Chr11 1907762 1907775 13
Deletion Chr9 2429329 2429331 2
Deletion Chr11 2919911 2919912 1
Deletion Chr5 5507295 5507296 1
Deletion Chr3 9014535 9014555 20
Deletion Chr4 13171382 13171383 1
Deletion Chr2 13355444 13355449 5
Deletion Chr11 14880001 14991000 110999 5
Deletion Chr3 16652864 16652955 91
Deletion Chr10 21950368 21950372 4
Deletion Chr6 22918555 22918556 1
Deletion Chr11 26780001 26792000 11999 2
Deletion Chr1 38829458 38829461 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 10335753 10335755 1
Insertion Chr11 25162046 25162048 1
Insertion Chr12 26049535 26049537 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14879909 15046427
Inversion Chr11 14991449 15046443

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5195187	T-C	Homo	INTRON
SBS	Chr1	12710197	G-A	Hetero	INTERGENIC
SBS	Chr1	17648459	C-T	Hetero	INTERGENIC
SBS	Chr1	29213354	G-C	Homo	INTERGENIC
SBS	Chr1	37228733	G-A	Homo	INTERGENIC
SBS	Chr2	1559848	C-T	Homo	INTERGENIC
SBS	Chr4	16875286	G-T	Homo	INTRON
SBS	Chr4	19430891	G-A	Homo	INTERGENIC
SBS	Chr5	7872928	T-C	Hetero	INTERGENIC
SBS	Chr5	17712092	G-A	Homo	INTERGENIC
SBS	Chr8	11147054	T-C	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Hetero	INTERGENIC
SBS	Chr8	27716473	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	28365942	T-C	Hetero	INTRON
SBS	Chr9	1924871	C-A	Homo	INTERGENIC
SBS	Chr9	19245343	C-T	Homo	INTERGENIC
SBS	Chr10	5947082	C-T	Homo	INTERGENIC
SBS	Chr10	17969005	G-A	Hetero	INTERGENIC
SBS	Chr11	16574878	A-G	Homo	INTERGENIC
SBS	Chr11	27642788	A-G	Hetero	INTERGENIC
SBS	Chr12	7125651	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g079800
SBS	Chr12	20506377	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	798421	798429	8
Deletion	Chr11	1907762	1907775	13
Deletion	Chr9	2429329	2429331	2
Deletion	Chr11	2919911	2919912	1
Deletion	Chr5	5507295	5507296	1
Deletion	Chr3	9014535	9014555	20
Deletion	Chr4	13171382	13171383	1
Deletion	Chr2	13355444	13355449	5
Deletion	Chr11	14880001	14991000	110999	5
Deletion	Chr3	16652864	16652955	91
Deletion	Chr10	21950368	21950372	4
Deletion	Chr6	22918555	22918556	1
Deletion	Chr11	26780001	26792000	11999	2
Deletion	Chr1	38829458	38829461	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14879909	15046427
Inversion	Chr11	14991449	15046443

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes