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| Mutant Information |
|---|
| Mutant Name | 707-4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 707-4 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6638216 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 17666826 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g180200 |
| SBS | Chr1 | 29213354 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 37228733 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 1559848 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 10525950 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 28050967 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 30836398 | T-C | Homo | INTRON | |
| SBS | Chr3 | 11568935 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14013459 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25482169 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27427825 | G-C | Hetero | INTRON | |
| SBS | Chr5 | 7012621 | T-G | Homo | INTRON | |
| SBS | Chr5 | 17712092 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13171666 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15347347 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 21292379 | T-G | Homo | INTRON | |
| SBS | Chr6 | 21333407 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14286230 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28665025 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7775983 | G-A | Homo | INTRON | |
| SBS | Chr8 | 18533365 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22850908 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 28365942 | T-C | Homo | INTRON | |
| SBS | Chr9 | 77245 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5947082 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 8079769 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 9064972 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18749750 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 18791945 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7125651 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g079800 |
| SBS | Chr12 | 23791475 | C-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2919911 | 2919912 | 1 | |
| Deletion | Chr8 | 5076763 | 5076764 | 1 | |
| Deletion | Chr7 | 8212862 | 8212863 | 1 | |
| Deletion | Chr10 | 8429248 | 8429258 | 10 | |
| Deletion | Chr11 | 14879001 | 14996000 | 116999 | 5 |
| Deletion | Chr9 | 19998061 | 19998062 | 1 | |
| Deletion | Chr6 | 21291971 | 21291989 | 18 | |
| Deletion | Chr10 | 21950368 | 21950372 | 4 | |
| Deletion | Chr1 | 22232688 | 22232690 | 2 | |
| Deletion | Chr1 | 22525760 | 22525763 | 3 | |
| Deletion | Chr11 | 26777001 | 26792000 | 14999 | 2 |
| Deletion | Chr2 | 29337262 | 29337263 | 1 | OsKitaake02g295100 |
| Deletion | Chr1 | 38829458 | 38829461 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 10335753 | 10335755 | 1 | |
| Insertion | Chr5 | 30219464 | 30219472 | 7 | |
| Insertion | Chr5 | 30231639 | 30231641 | 1 | |
| Insertion | Chr7 | 17162609 | 17162611 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 14879909 | 15046427 | |
| Inversion | Chr11 | 14991449 | 15046443 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 15777419 | Chr6 | 6447393 |