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Mutant Information

Mutant Name	707-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-5 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29213354 G-C Homo INTERGENIC
SBS Chr2 1559848 C-T Homo INTERGENIC
SBS Chr3 25482169 C-T Hetero INTERGENIC
SBS Chr4 8426222 G-A Homo INTERGENIC
SBS Chr4 16875286 G-T Homo INTRON
SBS Chr4 19430891 G-A Homo INTERGENIC
SBS Chr4 36583270 T-G Homo INTERGENIC
SBS Chr5 7012621 T-G Hetero INTRON
SBS Chr5 17712092 G-A Homo INTERGENIC
SBS Chr6 3688144 G-A Homo INTERGENIC
SBS Chr6 9751046 G-A Hetero INTERGENIC
SBS Chr6 13171666 T-C Hetero INTERGENIC
SBS Chr7 14286230 C-T Homo INTERGENIC
SBS Chr7 25338210 A-C Hetero INTERGENIC
SBS Chr7 28665025 A-C Homo INTERGENIC
SBS Chr8 12750888 G-T Hetero INTERGENIC
SBS Chr8 14668209 T-A Hetero INTERGENIC
SBS Chr8 28365942 T-C Homo INTRON
SBS Chr9 1924871 C-A Homo INTERGENIC
SBS Chr9 14155398 G-A Homo INTERGENIC
SBS Chr10 878475 C-T Hetero INTERGENIC
SBS Chr10 18791945 G-A Hetero INTERGENIC
SBS Chr11 16574878 A-G Homo INTERGENIC
SBS Chr11 28253890 G-C Hetero INTERGENIC
SBS Chr12 6201256 T-C Homo INTERGENIC
SBS Chr12 7125651 T-G Homo NON_SYNONYMOUS_CODING OsKitaake12g079800

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 10806835 10806909 74
Deletion Chr11 13587115 13587195 80
Deletion Chr11 14879001 14993000 113999 5
Deletion Chr10 20108401 20108403 2
Deletion Chr9 20561113 20561116 3
Deletion Chr8 20851292 20851298 6
Deletion Chr10 21950368 21950372 4
Deletion Chr1 22525760 22525763 3
Deletion Chr11 26777001 26794000 16999 2
Deletion Chr4 34212244 34212251 7
Deletion Chr1 37600951 37600952 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13592277 13592280 2
Insertion Chr5 30232136 30232144 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14879909 15046427
Inversion Chr11 14991449 15046443

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6916255 Chr6 5683053
Translocation Chr10 13161286 Chr8 13883618

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29213354	G-C	Homo	INTERGENIC
SBS	Chr2	1559848	C-T	Homo	INTERGENIC
SBS	Chr3	25482169	C-T	Hetero	INTERGENIC
SBS	Chr4	8426222	G-A	Homo	INTERGENIC
SBS	Chr4	16875286	G-T	Homo	INTRON
SBS	Chr4	19430891	G-A	Homo	INTERGENIC
SBS	Chr4	36583270	T-G	Homo	INTERGENIC
SBS	Chr5	7012621	T-G	Hetero	INTRON
SBS	Chr5	17712092	G-A	Homo	INTERGENIC
SBS	Chr6	3688144	G-A	Homo	INTERGENIC
SBS	Chr6	9751046	G-A	Hetero	INTERGENIC
SBS	Chr6	13171666	T-C	Hetero	INTERGENIC
SBS	Chr7	14286230	C-T	Homo	INTERGENIC
SBS	Chr7	25338210	A-C	Hetero	INTERGENIC
SBS	Chr7	28665025	A-C	Homo	INTERGENIC
SBS	Chr8	12750888	G-T	Hetero	INTERGENIC
SBS	Chr8	14668209	T-A	Hetero	INTERGENIC
SBS	Chr8	28365942	T-C	Homo	INTRON
SBS	Chr9	1924871	C-A	Homo	INTERGENIC
SBS	Chr9	14155398	G-A	Homo	INTERGENIC
SBS	Chr10	878475	C-T	Hetero	INTERGENIC
SBS	Chr10	18791945	G-A	Hetero	INTERGENIC
SBS	Chr11	16574878	A-G	Homo	INTERGENIC
SBS	Chr11	28253890	G-C	Hetero	INTERGENIC
SBS	Chr12	6201256	T-C	Homo	INTERGENIC
SBS	Chr12	7125651	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g079800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	10806835	10806909	74
Deletion	Chr11	13587115	13587195	80
Deletion	Chr11	14879001	14993000	113999	5
Deletion	Chr10	20108401	20108403	2
Deletion	Chr9	20561113	20561116	3
Deletion	Chr8	20851292	20851298	6
Deletion	Chr10	21950368	21950372	4
Deletion	Chr1	22525760	22525763	3
Deletion	Chr11	26777001	26794000	16999	2
Deletion	Chr4	34212244	34212251	7
Deletion	Chr1	37600951	37600952	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14879909	15046427
Inversion	Chr11	14991449	15046443

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes