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Mutant Information

Mutant Name	707-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-6 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6638216 C-A Homo SYNONYMOUS_CODING
SBS Chr1 22653723 C-T Homo INTERGENIC
SBS Chr1 37228733 G-A Hetero INTERGENIC
SBS Chr2 16882598 G-A Homo INTERGENIC
SBS Chr2 30836398 T-C Homo INTRON
SBS Chr4 9501947 G-A Homo INTERGENIC
SBS Chr4 16875286 G-T Homo INTRON
SBS Chr4 19430891 G-A Homo INTERGENIC
SBS Chr4 23775910 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g150400
SBS Chr4 23778899 A-G Hetero INTRON
SBS Chr5 7012621 T-G Homo INTRON
SBS Chr5 17712092 G-A Homo INTERGENIC
SBS Chr7 12491780 C-T Hetero INTERGENIC
SBS Chr7 27918574 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g261800
SBS Chr7 28665025 A-C Hetero INTERGENIC
SBS Chr8 7775983 G-A Homo INTRON
SBS Chr8 18533365 A-T Homo INTERGENIC
SBS Chr8 28365942 T-C Homo INTRON
SBS Chr9 1924871 C-A Homo INTERGENIC
SBS Chr9 4607805 C-A Homo INTERGENIC
SBS Chr10 4627588 C-G Hetero INTERGENIC
SBS Chr10 5001318 A-T Hetero INTERGENIC
SBS Chr10 5947082 C-T Homo INTERGENIC
SBS Chr10 7237780 G-A Hetero INTERGENIC
SBS Chr10 8079769 T-A Hetero INTERGENIC
SBS Chr10 18791945 G-A Homo INTERGENIC
SBS Chr12 7125651 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g079800
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2429329 2429331 2
Deletion Chr11 2919911 2919912 1
Deletion Chr10 4231436 4231562 126
Deletion Chr11 7413998 7414000 2
Deletion Chr10 8675813 8675979 166
Deletion Chr11 14878001 14992000 113999 5
Deletion Chr9 16286198 16286200 2
Deletion Chr5 19598537 19598538 1
Deletion Chr5 21673368 21673369 1
Deletion Chr10 21950368 21950372 4
Deletion Chr10 22949081 22949095 14
Deletion Chr10 23406833 23406835 2
Deletion Chr5 30165667 30165668 1
Deletion Chr5 30246720 30246721 1
Deletion Chr4 34212244 34212251 7
Deletion Chr1 38829458 38829461 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 24524126 24524129 2
Insertion Chr5 30240668 30240670 1
Insertion Chr7 8498072 8498074 1
Insertion Chr10 5415995 5415997 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14879909 15046427
Inversion Chr11 14991449 15046443

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13129837 Chr4 9662381
Translocation Chr10 13161109 Chr8 13883616
Translocation Chr9 16491826 Chr6 16232864

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6638216	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	22653723	C-T	Homo	INTERGENIC
SBS	Chr1	37228733	G-A	Hetero	INTERGENIC
SBS	Chr2	16882598	G-A	Homo	INTERGENIC
SBS	Chr2	30836398	T-C	Homo	INTRON
SBS	Chr4	9501947	G-A	Homo	INTERGENIC
SBS	Chr4	16875286	G-T	Homo	INTRON
SBS	Chr4	19430891	G-A	Homo	INTERGENIC
SBS	Chr4	23775910	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g150400
SBS	Chr4	23778899	A-G	Hetero	INTRON
SBS	Chr5	7012621	T-G	Homo	INTRON
SBS	Chr5	17712092	G-A	Homo	INTERGENIC
SBS	Chr7	12491780	C-T	Hetero	INTERGENIC
SBS	Chr7	27918574	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g261800
SBS	Chr7	28665025	A-C	Hetero	INTERGENIC
SBS	Chr8	7775983	G-A	Homo	INTRON
SBS	Chr8	18533365	A-T	Homo	INTERGENIC
SBS	Chr8	28365942	T-C	Homo	INTRON
SBS	Chr9	1924871	C-A	Homo	INTERGENIC
SBS	Chr9	4607805	C-A	Homo	INTERGENIC
SBS	Chr10	4627588	C-G	Hetero	INTERGENIC
SBS	Chr10	5001318	A-T	Hetero	INTERGENIC
SBS	Chr10	5947082	C-T	Homo	INTERGENIC
SBS	Chr10	7237780	G-A	Hetero	INTERGENIC
SBS	Chr10	8079769	T-A	Hetero	INTERGENIC
SBS	Chr10	18791945	G-A	Homo	INTERGENIC
SBS	Chr12	7125651	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g079800
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2429329	2429331	2
Deletion	Chr11	2919911	2919912	1
Deletion	Chr10	4231436	4231562	126
Deletion	Chr11	7413998	7414000	2
Deletion	Chr10	8675813	8675979	166
Deletion	Chr11	14878001	14992000	113999	5
Deletion	Chr9	16286198	16286200	2
Deletion	Chr5	19598537	19598538	1
Deletion	Chr5	21673368	21673369	1
Deletion	Chr10	21950368	21950372	4
Deletion	Chr10	22949081	22949095	14
Deletion	Chr10	23406833	23406835	2
Deletion	Chr5	30165667	30165668	1
Deletion	Chr5	30246720	30246721	1
Deletion	Chr4	34212244	34212251	7
Deletion	Chr1	38829458	38829461	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14879909	15046427
Inversion	Chr11	14991449	15046443

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes