Search Kitaake

Mutant Information

Mutant Name	707-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 707-7 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2867824 G-T Hetero UTR_3_PRIME
SBS Chr1 6638216 C-A Homo SYNONYMOUS_CODING
SBS Chr1 29213354 G-C Homo INTERGENIC
SBS Chr2 1559848 C-T Homo INTERGENIC
SBS Chr2 10525950 C-T Homo UTR_5_PRIME
SBS Chr2 19313639 C-T Hetero INTERGENIC
SBS Chr3 25482169 C-T Homo INTERGENIC
SBS Chr4 16875286 G-T Homo INTRON
SBS Chr4 19430891 G-A Homo INTERGENIC
SBS Chr4 23775910 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g150400
SBS Chr4 23775913 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g150400
SBS Chr4 23778899 A-G Homo INTRON
SBS Chr5 7012621 T-G Homo INTRON
SBS Chr5 8465683 G-A Hetero INTERGENIC
SBS Chr5 17712092 G-A Homo INTERGENIC
SBS Chr6 13171666 T-C Hetero INTERGENIC
SBS Chr6 19257762 G-A Hetero INTERGENIC
SBS Chr6 25503633 C-T Hetero INTERGENIC
SBS Chr7 5397671 G-A Homo INTERGENIC
SBS Chr7 14286230 C-T Homo INTERGENIC
SBS Chr8 1429490 A-T Homo UTR_5_PRIME
SBS Chr8 28365942 T-C Homo INTRON
SBS Chr9 1924871 C-A Homo INTERGENIC
SBS Chr9 9431729 C-G Homo INTERGENIC
SBS Chr9 10413815 G-A Hetero UTR_3_PRIME
SBS Chr9 19245343 C-T Homo INTERGENIC
SBS Chr10 6624596 C-T Hetero INTRON
SBS Chr10 7475226 G-A Hetero INTERGENIC
SBS Chr10 8079769 T-A Hetero INTERGENIC
SBS Chr10 9064972 C-A Hetero INTERGENIC
SBS Chr10 18791945 G-A Hetero INTERGENIC
SBS Chr10 19911357 C-T Hetero INTERGENIC
SBS Chr12 8950616 C-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1440863 1440865 2
Deletion Chr11 2375977 2375979 2
Deletion Chr11 12522101 12522266 165
Deletion Chr11 13627337 13627339 2
Deletion Chr1 13956728 13956729 1
Deletion Chr6 14273007 14273217 210
Deletion Chr11 14877001 14995000 117999 5
Deletion Chr9 20978861 20978863 2
Deletion Chr10 21950368 21950372 4
Deletion Chr6 22161453 22161454 1
Deletion Chr10 22949081 22949095 14
Deletion Chr10 23406833 23406835 2
Deletion Chr11 26777001 26795000 17999 2
Deletion Chr1 32791359 32791484 125
Deletion Chr1 37600951 37600952 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44213717 44213721 3
Insertion Chr7 24524126 24524129 2
Insertion Chr5 30236466 30236474 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13131316 13149855
Inversion Chr11 14879909 15046427
Inversion Chr11 14991449 15046443

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21806974 Chr2 3338812 OsKitaake07g183300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2867824	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	6638216	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	29213354	G-C	Homo	INTERGENIC
SBS	Chr2	1559848	C-T	Homo	INTERGENIC
SBS	Chr2	10525950	C-T	Homo	UTR_5_PRIME
SBS	Chr2	19313639	C-T	Hetero	INTERGENIC
SBS	Chr3	25482169	C-T	Homo	INTERGENIC
SBS	Chr4	16875286	G-T	Homo	INTRON
SBS	Chr4	19430891	G-A	Homo	INTERGENIC
SBS	Chr4	23775910	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g150400
SBS	Chr4	23775913	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g150400
SBS	Chr4	23778899	A-G	Homo	INTRON
SBS	Chr5	7012621	T-G	Homo	INTRON
SBS	Chr5	8465683	G-A	Hetero	INTERGENIC
SBS	Chr5	17712092	G-A	Homo	INTERGENIC
SBS	Chr6	13171666	T-C	Hetero	INTERGENIC
SBS	Chr6	19257762	G-A	Hetero	INTERGENIC
SBS	Chr6	25503633	C-T	Hetero	INTERGENIC
SBS	Chr7	5397671	G-A	Homo	INTERGENIC
SBS	Chr7	14286230	C-T	Homo	INTERGENIC
SBS	Chr8	1429490	A-T	Homo	UTR_5_PRIME
SBS	Chr8	28365942	T-C	Homo	INTRON
SBS	Chr9	1924871	C-A	Homo	INTERGENIC
SBS	Chr9	9431729	C-G	Homo	INTERGENIC
SBS	Chr9	10413815	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	19245343	C-T	Homo	INTERGENIC
SBS	Chr10	6624596	C-T	Hetero	INTRON
SBS	Chr10	7475226	G-A	Hetero	INTERGENIC
SBS	Chr10	8079769	T-A	Hetero	INTERGENIC
SBS	Chr10	9064972	C-A	Hetero	INTERGENIC
SBS	Chr10	18791945	G-A	Hetero	INTERGENIC
SBS	Chr10	19911357	C-T	Hetero	INTERGENIC
SBS	Chr12	8950616	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1440863	1440865	2
Deletion	Chr11	2375977	2375979	2
Deletion	Chr11	12522101	12522266	165
Deletion	Chr11	13627337	13627339	2
Deletion	Chr1	13956728	13956729	1
Deletion	Chr6	14273007	14273217	210
Deletion	Chr11	14877001	14995000	117999	5
Deletion	Chr9	20978861	20978863	2
Deletion	Chr10	21950368	21950372	4
Deletion	Chr6	22161453	22161454	1
Deletion	Chr10	22949081	22949095	14
Deletion	Chr10	23406833	23406835	2
Deletion	Chr11	26777001	26795000	17999	2
Deletion	Chr1	32791359	32791484	125
Deletion	Chr1	37600951	37600952	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13131316	13149855
Inversion	Chr11	14879909	15046427
Inversion	Chr11	14991449	15046443

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes