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| Mutant Information |
|---|
| Mutant Name | 822-5-5 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 822-5-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27851702 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 11010416 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2516395 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6254080 | C-A | Homo | INTRON | |
| SBS | Chr3 | 6351345 | G-T | Homo | INTRON | |
| SBS | Chr3 | 7306189 | C-T | Homo | INTRON | |
| SBS | Chr3 | 15195786 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17060244 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 2395470 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12428975 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28993858 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17017102 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6612150 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24695079 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8343138 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 19041066 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 1396281 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3995386 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 12101563 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13686154 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 19079634 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 19490936 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19490937 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20721313 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 22152659 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22369970 | A-G | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3381769 | 3381770 | 1 | |
| Deletion | Chr6 | 3726248 | 3726252 | 4 | |
| Deletion | Chr6 | 7340762 | 7340763 | 1 | |
| Deletion | Chr6 | 10059513 | 10059514 | 1 | |
| Deletion | Chr11 | 10257352 | 10257358 | 6 | |
| Deletion | Chr11 | 12526006 | 12526161 | 155 | |
| Deletion | Chr2 | 21617571 | 21617786 | 215 | |
| Deletion | Chr2 | 28242804 | 28242807 | 3 | |
| Deletion | Chr2 | 29904146 | 29904147 | 1 | OsKitaake02g302900 |
| Deletion | Chr3 | 37581064 | 37581066 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 20248201 | 20248204 | 2 | |
| Insertion | Chr6 | 11200865 | 11200886 | 20 | |
| Insertion | Chr8 | 8960664 | 8960673 | 8 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 12903824 | 13663714 | |
| Inversion | Chr11 | 12903829 | 13663715 | |
| Inversion | Chr7 | 17140263 | 17291791 | |
| Inversion | Chr7 | 17140388 | 17291791 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 7226951 | Chr1 | 19041061 | |
| Translocation | Chr6 | 7226957 | Chr1 | 19041608 | |
| Translocation | Chr10 | 8667839 | Chr1 | 17283848 | |
| Translocation | Chr11 | 12903773 | Chr5 | 3267989 |