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| Mutant Information |
|---|
| Mutant Name | 822-5-6 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download 822-5-6 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22585183 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27851702 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 11010416 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2516395 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6254080 | C-A | Homo | INTRON | |
| SBS | Chr3 | 6351345 | G-T | Homo | INTRON | |
| SBS | Chr3 | 7306189 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 14997673 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17060244 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 31755818 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 31903798 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g253000 |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 2395470 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12428975 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12111043 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 25684243 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8343138 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13554354 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14460549 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 12101563 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 19079634 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22152659 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 487071 | G-A | Hetero | START_GAINED |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1440770 | 1440771 | 1 | |
| Deletion | Chr8 | 1440863 | 1440865 | 2 | |
| Deletion | Chr6 | 3726248 | 3726252 | 4 | |
| Deletion | Chr11 | 6905896 | 6905897 | 1 | OsKitaake11g079910 |
| Deletion | Chr11 | 7413998 | 7414000 | 2 | |
| Deletion | Chr11 | 10257352 | 10257358 | 6 | |
| Deletion | Chr4 | 13565073 | 13565081 | 8 | |
| Deletion | Chr2 | 15793707 | 15793710 | 3 | |
| Deletion | Chr11 | 15922621 | 15922623 | 2 | OsKitaake11g127700 |
| Deletion | Chr7 | 19685364 | 19685366 | 2 | |
| Deletion | Chr4 | 20795754 | 20795761 | 7 | |
| Deletion | Chr8 | 21359172 | 21359174 | 2 | OsKitaake08g160200 |
| Deletion | Chr2 | 28242804 | 28242807 | 3 | |
| Deletion | Chr2 | 29904146 | 29904147 | 1 | OsKitaake02g302900 |
| Deletion | Chr4 | 31913775 | 31913777 | 2 | |
| Deletion | Chr4 | 35844862 | 35844863 | 1 | |
| Deletion | Chr1 | 36497734 | 36497738 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5878477 | 5878480 | 2 | |
| Insertion | Chr7 | 23502520 | 23502522 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 17140389 | 17291792 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 7226951 | Chr1 | 19041064 | |
| Translocation | Chr6 | 7226957 | Chr1 | 19041608 |