Search Kitaake
| Mutant Information |
|---|
| Mutant Name | CW-631-3-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download CW-631-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 49
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 865764 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 1402273 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 14134431 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 36517113 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 15847008 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 15847009 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16908794 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24781064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29008013 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 29105113 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 18050388 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19412422 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21989667 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2261038 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 8148432 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14990287 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16968308 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 22893290 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g138200 |
| SBS | Chr4 | 23652108 | G-A | Homo | SPLICE_SITE_DONOR | OsKitaake04g149500 |
| SBS | Chr4 | 26912485 | T-A | Homo | INTRON | |
| SBS | Chr5 | 3075420 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17037843 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17196902 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17758078 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20619901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20619904 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 21402559 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22780334 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26679494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27425019 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 140749 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4121404 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 14386027 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22779984 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 26013930 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 9876001 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 22587776 | C-G | Homo | START_GAINED | |
| SBS | Chr7 | 23982523 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1127961 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 3014069 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g033600 |
| SBS | Chr8 | 15774031 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20117056 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5154096 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10710351 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 4620801 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 2376800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4359208 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 20586638 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25827683 | G-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 293001 | 321000 | 27999 | OsKitaake07g002500 |
| Deletion | Chr9 | 1553196 | 1553263 | 67 | |
| Deletion | Chr11 | 5831927 | 5832153 | 226 | |
| Deletion | Chr12 | 9611428 | 9611429 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 4716940 | 5151434 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 8427432 | Chr4 | 18859249 | |
| Translocation | Chr6 | 10988613 | Chr4 | 21577225 | |
| Translocation | Chr6 | 10989710 | Chr4 | 21577230 | |
| Translocation | Chr4 | 19856484 | Chr1 | 36936218 | OsKitaake01g393300 |
| Translocation | Chr4 | 19856502 | Chr1 | 36935793 | OsKitaake01g393300 |