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Mutant Information

Mutant Name	FN-10 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-10 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26712285 G-A Homo INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr3 1984876 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g028600
SBS Chr3 1984877 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g028600
SBS Chr6 4126555 T-C Hetero INTERGENIC
SBS Chr6 4741747 T-C Hetero INTERGENIC
SBS Chr6 5262121 C-T Hetero INTERGENIC
SBS Chr6 25035078 A-G Hetero INTERGENIC
SBS Chr6 28395906 C-T Hetero INTRON
SBS Chr7 7726512 C-G Hetero INTERGENIC
SBS Chr7 12788885 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g113400
SBS Chr8 25740014 G-T Hetero INTERGENIC
SBS Chr8 29308775 G-A Hetero UTR_3_PRIME
SBS Chr9 4577601 A-G Homo INTERGENIC
SBS Chr10 5247203 G-A Hetero INTERGENIC
SBS Chr10 9037527 C-G Hetero INTERGENIC
SBS Chr11 3936401 G-A Hetero INTERGENIC
SBS Chr11 25833857 G-A Homo INTERGENIC
SBS Chr12 8551299 T-C Hetero INTERGENIC
SBS Chr12 10188338 G-A Hetero INTERGENIC
SBS Chr12 24047235 T-C Homo INTERGENIC
SBS Chr12 26311021 A-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 703146 703154 8
Deletion Chr8 2989174 2989176 2 OsKitaake08g033100
Deletion Chr10 5135594 5135596 2
Deletion Chr1 7583865 7583867 2 OsKitaake01g095200
Deletion Chr6 8118001 8133000 14999 2
Deletion Chr6 8139001 8149000 9999 OsKitaake06g102900
Deletion Chr2 8425421 8425422 1
Deletion Chr9 9683992 9683993 1
Deletion Chr10 10299603 10299604 1
Deletion Chr11 12641742 12641744 2
Deletion Chr12 13008913 13009206 293
Deletion Chr11 13629621 13629624 3
Deletion Chr5 16414026 16414027 1
Deletion Chr11 19361762 19361764 2
Deletion Chr3 20174253 20174255 2
Deletion Chr3 24350853 24350854 1
Deletion Chr7 25932240 25932242 2
Deletion Chr3 27376758 27376759 1 OsKitaake03g282400
Deletion Chr1 29094452 29094519 67
Deletion Chr2 29431343 29431345 2
Deletion Chr2 31037115 31037118 3
Deletion Chr2 31805001 31828000 22999 10
Deletion Chr2 35462611 35462617 6
Deletion Chr4 35531979 35531987 8 OsKitaake04g302600

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18180096 18180098 1
Insertion Chr6 24954 24957 2
Insertion Chr10 1175187 1175190 2
Insertion Chr10 3567668 3567670 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26712285	G-A	Homo	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr3	1984876	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g028600
SBS	Chr3	1984877	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g028600
SBS	Chr6	4126555	T-C	Hetero	INTERGENIC
SBS	Chr6	4741747	T-C	Hetero	INTERGENIC
SBS	Chr6	5262121	C-T	Hetero	INTERGENIC
SBS	Chr6	25035078	A-G	Hetero	INTERGENIC
SBS	Chr6	28395906	C-T	Hetero	INTRON
SBS	Chr7	7726512	C-G	Hetero	INTERGENIC
SBS	Chr7	12788885	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g113400
SBS	Chr8	25740014	G-T	Hetero	INTERGENIC
SBS	Chr8	29308775	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	4577601	A-G	Homo	INTERGENIC
SBS	Chr10	5247203	G-A	Hetero	INTERGENIC
SBS	Chr10	9037527	C-G	Hetero	INTERGENIC
SBS	Chr11	3936401	G-A	Hetero	INTERGENIC
SBS	Chr11	25833857	G-A	Homo	INTERGENIC
SBS	Chr12	8551299	T-C	Hetero	INTERGENIC
SBS	Chr12	10188338	G-A	Hetero	INTERGENIC
SBS	Chr12	24047235	T-C	Homo	INTERGENIC
SBS	Chr12	26311021	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	703146	703154	8
Deletion	Chr8	2989174	2989176	2	OsKitaake08g033100
Deletion	Chr10	5135594	5135596	2
Deletion	Chr1	7583865	7583867	2	OsKitaake01g095200
Deletion	Chr6	8118001	8133000	14999	2
Deletion	Chr6	8139001	8149000	9999	OsKitaake06g102900
Deletion	Chr2	8425421	8425422	1
Deletion	Chr9	9683992	9683993	1
Deletion	Chr10	10299603	10299604	1
Deletion	Chr11	12641742	12641744	2
Deletion	Chr12	13008913	13009206	293
Deletion	Chr11	13629621	13629624	3
Deletion	Chr5	16414026	16414027	1
Deletion	Chr11	19361762	19361764	2
Deletion	Chr3	20174253	20174255	2
Deletion	Chr3	24350853	24350854	1
Deletion	Chr7	25932240	25932242	2
Deletion	Chr3	27376758	27376759	1	OsKitaake03g282400
Deletion	Chr1	29094452	29094519	67
Deletion	Chr2	29431343	29431345	2
Deletion	Chr2	31037115	31037118	3
Deletion	Chr2	31805001	31828000	22999	10
Deletion	Chr2	35462611	35462617	6
Deletion	Chr4	35531979	35531987	8	OsKitaake04g302600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes