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Mutant Information

Mutant Name	FN-102 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-102 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1999028 T-C Hetero INTERGENIC
SBS Chr1 5988197 T-G Hetero UTR_3_PRIME
SBS Chr1 9962588 A-G Hetero INTRON
SBS Chr1 15237513 G-A Hetero INTRON
SBS Chr1 34887395 C-T Homo INTERGENIC
SBS Chr1 42116630 A-T Hetero INTRON
SBS Chr1 42589529 T-G Homo INTERGENIC
SBS Chr2 4666483 T-C Hetero INTERGENIC
SBS Chr2 15127318 G-A Hetero INTERGENIC
SBS Chr2 16790383 G-A Hetero INTERGENIC
SBS Chr2 29242148 G-A Homo INTERGENIC
SBS Chr2 34916049 T-G Hetero INTERGENIC
SBS Chr2 34916050 A-T Hetero INTERGENIC
SBS Chr3 19032185 C-A Hetero INTERGENIC
SBS Chr3 19810114 G-C Hetero INTERGENIC
SBS Chr3 36811006 C-A Hetero INTRON
SBS Chr4 494894 A-G Hetero INTERGENIC
SBS Chr4 5715420 T-A Hetero INTERGENIC
SBS Chr4 10322307 G-A Homo INTERGENIC
SBS Chr4 22303933 C-T Hetero INTERGENIC
SBS Chr5 11551007 C-T Hetero INTERGENIC
SBS Chr5 12926226 G-A Hetero INTERGENIC
SBS Chr5 16156600 C-T Hetero INTERGENIC
SBS Chr6 5725963 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g075200
SBS Chr6 8401242 C-T Homo INTERGENIC
SBS Chr6 17565934 C-T Hetero INTERGENIC
SBS Chr7 7907467 T-A Hetero INTERGENIC
SBS Chr7 12761519 T-G Homo INTERGENIC
SBS Chr7 15411470 C-T Hetero INTERGENIC
SBS Chr8 116382 G-T Hetero INTERGENIC
SBS Chr8 2773206 T-A Homo INTERGENIC
SBS Chr8 3217597 A-G Homo INTERGENIC
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 17613487 C-T Hetero INTERGENIC
SBS Chr8 18581318 G-T Hetero INTERGENIC
SBS Chr8 21800155 C-A Hetero INTERGENIC
SBS Chr8 22401588 T-A Hetero INTERGENIC
SBS Chr8 24722661 C-G Hetero INTERGENIC
SBS Chr8 26257033 C-T Hetero INTERGENIC
SBS Chr10 1287510 C-A Homo INTERGENIC
SBS Chr11 6406941 C-G Hetero INTERGENIC
SBS Chr11 7038314 G-C Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 339416 339421 5
Deletion Chr12 13711782 13711786 4
Deletion Chr7 13988164 13988165 1
Deletion Chr6 16219642 16219643 1
Deletion Chr3 19438741 19438745 4
Deletion Chr12 20545713 20545723 10
Deletion Chr8 24260671 24260672 1
Deletion Chr4 25515801 25515802 1
Deletion Chr11 28372796 28372797 1
Deletion Chr1 28957137 28957160 23
Deletion Chr1 37326732 37326737 5

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1267003 1883405
Inversion Chr9 15198765 15346732 OsKitaake09g106100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1999028	T-C	Hetero	INTERGENIC
SBS	Chr1	5988197	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	9962588	A-G	Hetero	INTRON
SBS	Chr1	15237513	G-A	Hetero	INTRON
SBS	Chr1	34887395	C-T	Homo	INTERGENIC
SBS	Chr1	42116630	A-T	Hetero	INTRON
SBS	Chr1	42589529	T-G	Homo	INTERGENIC
SBS	Chr2	4666483	T-C	Hetero	INTERGENIC
SBS	Chr2	15127318	G-A	Hetero	INTERGENIC
SBS	Chr2	16790383	G-A	Hetero	INTERGENIC
SBS	Chr2	29242148	G-A	Homo	INTERGENIC
SBS	Chr2	34916049	T-G	Hetero	INTERGENIC
SBS	Chr2	34916050	A-T	Hetero	INTERGENIC
SBS	Chr3	19032185	C-A	Hetero	INTERGENIC
SBS	Chr3	19810114	G-C	Hetero	INTERGENIC
SBS	Chr3	36811006	C-A	Hetero	INTRON
SBS	Chr4	494894	A-G	Hetero	INTERGENIC
SBS	Chr4	5715420	T-A	Hetero	INTERGENIC
SBS	Chr4	10322307	G-A	Homo	INTERGENIC
SBS	Chr4	22303933	C-T	Hetero	INTERGENIC
SBS	Chr5	11551007	C-T	Hetero	INTERGENIC
SBS	Chr5	12926226	G-A	Hetero	INTERGENIC
SBS	Chr5	16156600	C-T	Hetero	INTERGENIC
SBS	Chr6	5725963	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g075200
SBS	Chr6	8401242	C-T	Homo	INTERGENIC
SBS	Chr6	17565934	C-T	Hetero	INTERGENIC
SBS	Chr7	7907467	T-A	Hetero	INTERGENIC
SBS	Chr7	12761519	T-G	Homo	INTERGENIC
SBS	Chr7	15411470	C-T	Hetero	INTERGENIC
SBS	Chr8	116382	G-T	Hetero	INTERGENIC
SBS	Chr8	2773206	T-A	Homo	INTERGENIC
SBS	Chr8	3217597	A-G	Homo	INTERGENIC
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	17613487	C-T	Hetero	INTERGENIC
SBS	Chr8	18581318	G-T	Hetero	INTERGENIC
SBS	Chr8	21800155	C-A	Hetero	INTERGENIC
SBS	Chr8	22401588	T-A	Hetero	INTERGENIC
SBS	Chr8	24722661	C-G	Hetero	INTERGENIC
SBS	Chr8	26257033	C-T	Hetero	INTERGENIC
SBS	Chr10	1287510	C-A	Homo	INTERGENIC
SBS	Chr11	6406941	C-G	Hetero	INTERGENIC
SBS	Chr11	7038314	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	339416	339421	5
Deletion	Chr12	13711782	13711786	4
Deletion	Chr7	13988164	13988165	1
Deletion	Chr6	16219642	16219643	1
Deletion	Chr3	19438741	19438745	4
Deletion	Chr12	20545713	20545723	10
Deletion	Chr8	24260671	24260672	1
Deletion	Chr4	25515801	25515802	1
Deletion	Chr11	28372796	28372797	1
Deletion	Chr1	28957137	28957160	23
Deletion	Chr1	37326732	37326737	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1267003	1883405
Inversion	Chr9	15198765	15346732	OsKitaake09g106100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes