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| Mutant Information |
|---|
| Mutant Name | FN-103 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-103 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 449730 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 11811531 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g145600 |
| SBS | Chr2 | 4835120 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 5506919 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 9562954 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17448507 | C-A | Homo | INTRON | |
| SBS | Chr2 | 25981825 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15617275 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g200600 |
| SBS | Chr4 | 3490037 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 968434 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g010900 |
| SBS | Chr6 | 15488989 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 18168806 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 25605568 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14808119 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 14889604 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 27585481 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 5843132 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 16215068 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9432740 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 14365793 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18760018 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 2688161 | T-G | Hetero | INTRON | |
| SBS | Chr11 | 17089002 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19889651 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29590138 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 14255266 | A-G | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 6637586 | 6637589 | 3 | |
| Deletion | Chr4 | 9393085 | 9393087 | 2 | |
| Deletion | Chr8 | 10683908 | 10683912 | 4 | |
| Deletion | Chr10 | 11585924 | 11585927 | 3 | |
| Deletion | Chr1 | 13644121 | 13644122 | 1 | |
| Deletion | Chr9 | 13884919 | 13884922 | 3 | |
| Deletion | Chr1 | 15409205 | 15409272 | 67 | |
| Deletion | Chr5 | 18564755 | 18564756 | 1 | |
| Deletion | Chr2 | 23550265 | 23550266 | 1 | |
| Deletion | Chr6 | 25477485 | 25477486 | 1 | OsKitaake06g226100 |
| Deletion | Chr5 | 29461455 | 29461457 | 2 | |
| Deletion | Chr1 | 40232269 | 40232270 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 30219464 | 30219472 | 7 | |
| Insertion | Chr5 | 30226856 | 30226864 | 7 | |
| Insertion | Chr5 | 30228119 | 30228121 | 1 | |
| Insertion | Chr12 | 8645212 | 8645214 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 21899808 | 22229672 | OsKitaake10g181300 |
| Inversion | Chr10 | 22016791 | 22229668 | OsKitaake10g181300 |