Search Kitaake

Mutant Information

Mutant Name	FN-104 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-104 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14193924 G-C Homo INTERGENIC
SBS Chr1 22250516 G-C Hetero INTERGENIC
SBS Chr1 34634445 G-T Homo INTERGENIC
SBS Chr1 37098289 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g395500
SBS Chr2 4297045 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g060500
SBS Chr2 7529018 C-T Hetero INTERGENIC
SBS Chr2 9717857 C-T Hetero INTERGENIC
SBS Chr3 817187 A-T Homo INTRON
SBS Chr3 7228303 T-G Hetero INTERGENIC
SBS Chr3 17268601 G-T Homo INTERGENIC
SBS Chr3 30686364 G-C Hetero INTERGENIC
SBS Chr3 32976067 C-T Hetero INTRON
SBS Chr4 19393202 C-T Homo INTERGENIC
SBS Chr4 22620839 T-C Homo INTERGENIC
SBS Chr4 23156491 T-C Hetero INTRON
SBS Chr6 4447207 C-T Hetero INTRON
SBS Chr6 19086084 A-C Hetero INTERGENIC
SBS Chr6 25868761 A-G Hetero UTR_5_PRIME
SBS Chr7 1962962 G-T Homo INTERGENIC
SBS Chr7 1962963 A-T Homo INTERGENIC
SBS Chr7 7765173 G-A Hetero INTERGENIC
SBS Chr7 22595902 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g193200
SBS Chr7 24024481 G-C Hetero INTERGENIC
SBS Chr8 28634529 G-T Homo INTERGENIC
SBS Chr9 11807113 C-T Homo INTRON
SBS Chr9 11807115 C-T Homo INTRON
SBS Chr9 11807116 C-T Homo INTRON
SBS Chr9 13016701 T-A Homo INTERGENIC
SBS Chr9 19390639 C-T Hetero INTRON
SBS Chr10 2699001 T-C Hetero INTERGENIC
SBS Chr10 3906341 T-A Homo INTERGENIC
SBS Chr10 7091154 G-T Homo INTERGENIC
SBS Chr11 3977178 G-A Hetero INTERGENIC
SBS Chr11 3977179 C-A Hetero INTERGENIC
SBS Chr11 7618419 C-T Hetero INTERGENIC
SBS Chr11 13997440 C-A Hetero INTERGENIC
SBS Chr11 14976795 C-A Homo INTERGENIC
SBS Chr11 29389622 C-T Homo INTERGENIC
SBS Chr12 1490180 G-C Homo INTERGENIC
SBS Chr12 14943107 A-G Hetero INTERGENIC
SBS Chr12 15931274 C-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2225051 2225053 2
Deletion Chr8 4889806 4890174 368
Deletion Chr8 6949879 6949880 1
Deletion Chr10 7665667 7665669 2
Deletion Chr4 8445099 8445100 1
Deletion Chr11 9228479 9228480 1
Deletion Chr7 10128001 10163000 34999 4
Deletion Chr4 11721632 11721634 2
Deletion Chr7 13206001 13265000 58999 4
Deletion Chr10 14570843 14570844 1
Deletion Chr3 17358936 17359015 79
Deletion Chr4 17722892 17722893 1
Deletion Chr6 22052144 22052146 2 OsKitaake06g194200
Deletion Chr1 23021377 23021379 2
Deletion Chr8 28316001 28382000 65999 7
Deletion Chr8 28525181 28525182 1
Deletion Chr1 38249577 38249583 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31965684 31965686 1
Insertion Chr8 22826309 22826311 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 17615444 17615669 OsKitaake07g142700
Inversion Chr1 37276062 37964853
Inversion Chr1 37276065 37965278

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 25741786 Chr9 3231080

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14193924	G-C	Homo	INTERGENIC
SBS	Chr1	22250516	G-C	Hetero	INTERGENIC
SBS	Chr1	34634445	G-T	Homo	INTERGENIC
SBS	Chr1	37098289	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g395500
SBS	Chr2	4297045	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g060500
SBS	Chr2	7529018	C-T	Hetero	INTERGENIC
SBS	Chr2	9717857	C-T	Hetero	INTERGENIC
SBS	Chr3	817187	A-T	Homo	INTRON
SBS	Chr3	7228303	T-G	Hetero	INTERGENIC
SBS	Chr3	17268601	G-T	Homo	INTERGENIC
SBS	Chr3	30686364	G-C	Hetero	INTERGENIC
SBS	Chr3	32976067	C-T	Hetero	INTRON
SBS	Chr4	19393202	C-T	Homo	INTERGENIC
SBS	Chr4	22620839	T-C	Homo	INTERGENIC
SBS	Chr4	23156491	T-C	Hetero	INTRON
SBS	Chr6	4447207	C-T	Hetero	INTRON
SBS	Chr6	19086084	A-C	Hetero	INTERGENIC
SBS	Chr6	25868761	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	1962962	G-T	Homo	INTERGENIC
SBS	Chr7	1962963	A-T	Homo	INTERGENIC
SBS	Chr7	7765173	G-A	Hetero	INTERGENIC
SBS	Chr7	22595902	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g193200
SBS	Chr7	24024481	G-C	Hetero	INTERGENIC
SBS	Chr8	28634529	G-T	Homo	INTERGENIC
SBS	Chr9	11807113	C-T	Homo	INTRON
SBS	Chr9	11807115	C-T	Homo	INTRON
SBS	Chr9	11807116	C-T	Homo	INTRON
SBS	Chr9	13016701	T-A	Homo	INTERGENIC
SBS	Chr9	19390639	C-T	Hetero	INTRON
SBS	Chr10	2699001	T-C	Hetero	INTERGENIC
SBS	Chr10	3906341	T-A	Homo	INTERGENIC
SBS	Chr10	7091154	G-T	Homo	INTERGENIC
SBS	Chr11	3977178	G-A	Hetero	INTERGENIC
SBS	Chr11	3977179	C-A	Hetero	INTERGENIC
SBS	Chr11	7618419	C-T	Hetero	INTERGENIC
SBS	Chr11	13997440	C-A	Hetero	INTERGENIC
SBS	Chr11	14976795	C-A	Homo	INTERGENIC
SBS	Chr11	29389622	C-T	Homo	INTERGENIC
SBS	Chr12	1490180	G-C	Homo	INTERGENIC
SBS	Chr12	14943107	A-G	Hetero	INTERGENIC
SBS	Chr12	15931274	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2225051	2225053	2
Deletion	Chr8	4889806	4890174	368
Deletion	Chr8	6949879	6949880	1
Deletion	Chr10	7665667	7665669	2
Deletion	Chr4	8445099	8445100	1
Deletion	Chr11	9228479	9228480	1
Deletion	Chr7	10128001	10163000	34999	4
Deletion	Chr4	11721632	11721634	2
Deletion	Chr7	13206001	13265000	58999	4
Deletion	Chr10	14570843	14570844	1
Deletion	Chr3	17358936	17359015	79
Deletion	Chr4	17722892	17722893	1
Deletion	Chr6	22052144	22052146	2	OsKitaake06g194200
Deletion	Chr1	23021377	23021379	2
Deletion	Chr8	28316001	28382000	65999	7
Deletion	Chr8	28525181	28525182	1
Deletion	Chr1	38249577	38249583	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17615444	17615669	OsKitaake07g142700
Inversion	Chr1	37276062	37964853
Inversion	Chr1	37276065	37965278

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes