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Mutant Information

Mutant Name	FN-105 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-105 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22668656 T-C Hetero INTRON
SBS Chr1 27512961 T-C Homo UTR_5_PRIME
SBS Chr1 37782303 T-A Hetero INTERGENIC
SBS Chr1 39572590 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g427400
SBS Chr2 3740904 G-T Hetero INTRON
SBS Chr2 11182302 C-T Homo INTERGENIC
SBS Chr2 17725627 G-A Hetero INTRON
SBS Chr2 20834230 G-A Hetero INTERGENIC
SBS Chr3 2886975 T-C Homo INTERGENIC
SBS Chr3 3372797 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g047700
SBS Chr3 8080090 T-G Hetero INTERGENIC
SBS Chr3 23051949 G-A Hetero INTERGENIC
SBS Chr4 1422338 C-T Homo INTERGENIC
SBS Chr4 17275676 C-G Homo INTERGENIC
SBS Chr4 17826288 G-T Hetero INTERGENIC
SBS Chr4 22627037 T-C Hetero INTERGENIC
SBS Chr4 23827369 G-A Hetero INTERGENIC
SBS Chr4 30124431 T-C Hetero INTRON
SBS Chr5 1592238 T-C Hetero INTERGENIC
SBS Chr5 7846122 G-T Hetero INTERGENIC
SBS Chr5 13122469 C-G Homo INTERGENIC
SBS Chr5 13413845 C-T Hetero INTERGENIC
SBS Chr5 15356939 C-T Homo INTERGENIC
SBS Chr5 19936329 C-T Homo INTERGENIC
SBS Chr5 28399383 T-C Homo INTERGENIC
SBS Chr5 29208229 G-C Hetero INTRON
SBS Chr6 6567229 A-C Homo INTERGENIC
SBS Chr6 16259168 A-T Homo INTERGENIC
SBS Chr7 8422356 C-T Hetero INTRON
SBS Chr9 2084473 T-A Homo INTERGENIC
SBS Chr10 3416334 G-T Hetero INTERGENIC
SBS Chr10 11974217 T-C Homo NON_SYNONYMOUS_CODING OsKitaake10g071300
SBS Chr11 6780258 T-G Hetero INTERGENIC
SBS Chr12 9195857 A-C Hetero INTERGENIC
SBS Chr12 14270693 T-A Hetero INTERGENIC
SBS Chr12 21779264 T-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 249779 249780 1 OsKitaake04g001400
Deletion Chr4 2168206 2168207 1
Deletion Chr8 2409001 2418000 8999 OsKitaake08g028900
Deletion Chr4 3625611 3625736 125
Deletion Chr7 4649935 4649937 2
Deletion Chr1 4880916 4881264 348
Deletion Chr12 6311507 6311509 2
Deletion Chr11 10881349 10881351 2 OsKitaake11g105800
Deletion Chr2 11146069 11146074 5
Deletion Chr12 12437001 12712000 274999 19
Deletion Chr10 14584371 14584372 1
Deletion Chr6 15952626 15952635 9
Deletion Chr5 16743591 16743682 91
Deletion Chr5 17229074 17229475 401
Deletion Chr12 19301677 19301689 12
Deletion Chr3 22664333 22664335 2
Deletion Chr12 26250501 26250689 188
Deletion Chr4 35245945 35245954 9 OsKitaake04g297500
Deletion Chr1 43985976 43985978 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26310606 26310609 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2408306 2951420

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1830289 Chr5 16604676 OsKitaake05g127000
Translocation Chr8 3246811 Chr6 26244186
Translocation Chr9 22032591 Chr8 3259362 2
Translocation Chr9 22032594 Chr6 26244190 OsKitaake09g196800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22668656	T-C	Hetero	INTRON
SBS	Chr1	27512961	T-C	Homo	UTR_5_PRIME
SBS	Chr1	37782303	T-A	Hetero	INTERGENIC
SBS	Chr1	39572590	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g427400
SBS	Chr2	3740904	G-T	Hetero	INTRON
SBS	Chr2	11182302	C-T	Homo	INTERGENIC
SBS	Chr2	17725627	G-A	Hetero	INTRON
SBS	Chr2	20834230	G-A	Hetero	INTERGENIC
SBS	Chr3	2886975	T-C	Homo	INTERGENIC
SBS	Chr3	3372797	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g047700
SBS	Chr3	8080090	T-G	Hetero	INTERGENIC
SBS	Chr3	23051949	G-A	Hetero	INTERGENIC
SBS	Chr4	1422338	C-T	Homo	INTERGENIC
SBS	Chr4	17275676	C-G	Homo	INTERGENIC
SBS	Chr4	17826288	G-T	Hetero	INTERGENIC
SBS	Chr4	22627037	T-C	Hetero	INTERGENIC
SBS	Chr4	23827369	G-A	Hetero	INTERGENIC
SBS	Chr4	30124431	T-C	Hetero	INTRON
SBS	Chr5	1592238	T-C	Hetero	INTERGENIC
SBS	Chr5	7846122	G-T	Hetero	INTERGENIC
SBS	Chr5	13122469	C-G	Homo	INTERGENIC
SBS	Chr5	13413845	C-T	Hetero	INTERGENIC
SBS	Chr5	15356939	C-T	Homo	INTERGENIC
SBS	Chr5	19936329	C-T	Homo	INTERGENIC
SBS	Chr5	28399383	T-C	Homo	INTERGENIC
SBS	Chr5	29208229	G-C	Hetero	INTRON
SBS	Chr6	6567229	A-C	Homo	INTERGENIC
SBS	Chr6	16259168	A-T	Homo	INTERGENIC
SBS	Chr7	8422356	C-T	Hetero	INTRON
SBS	Chr9	2084473	T-A	Homo	INTERGENIC
SBS	Chr10	3416334	G-T	Hetero	INTERGENIC
SBS	Chr10	11974217	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g071300
SBS	Chr11	6780258	T-G	Hetero	INTERGENIC
SBS	Chr12	9195857	A-C	Hetero	INTERGENIC
SBS	Chr12	14270693	T-A	Hetero	INTERGENIC
SBS	Chr12	21779264	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	249779	249780	1	OsKitaake04g001400
Deletion	Chr4	2168206	2168207	1
Deletion	Chr8	2409001	2418000	8999	OsKitaake08g028900
Deletion	Chr4	3625611	3625736	125
Deletion	Chr7	4649935	4649937	2
Deletion	Chr1	4880916	4881264	348
Deletion	Chr12	6311507	6311509	2
Deletion	Chr11	10881349	10881351	2	OsKitaake11g105800
Deletion	Chr2	11146069	11146074	5
Deletion	Chr12	12437001	12712000	274999	19
Deletion	Chr10	14584371	14584372	1
Deletion	Chr6	15952626	15952635	9
Deletion	Chr5	16743591	16743682	91
Deletion	Chr5	17229074	17229475	401
Deletion	Chr12	19301677	19301689	12
Deletion	Chr3	22664333	22664335	2
Deletion	Chr12	26250501	26250689	188
Deletion	Chr4	35245945	35245954	9	OsKitaake04g297500
Deletion	Chr1	43985976	43985978	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2408306	2951420

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes