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Mutant Information

Mutant Name	FN-106 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-106 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12514420 C-T Hetero UTR_3_PRIME
SBS Chr1 23299207 A-C Hetero UTR_5_PRIME
SBS Chr1 24629801 C-T Hetero INTERGENIC
SBS Chr1 34278487 T-G Hetero INTERGENIC
SBS Chr1 37635243 C-T Hetero INTERGENIC
SBS Chr2 1356240 T-A Hetero UTR_3_PRIME
SBS Chr2 14943537 T-C Hetero INTERGENIC
SBS Chr2 18989112 T-A Homo INTRON
SBS Chr2 20568184 G-T Hetero INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 29630927 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 34423663 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 2871526 G-A Hetero INTERGENIC
SBS Chr3 9593683 C-A Hetero INTERGENIC
SBS Chr3 31075501 C-T Hetero UTR_5_PRIME
SBS Chr4 13718964 C-T Hetero INTERGENIC
SBS Chr5 19202646 A-G Homo INTERGENIC
SBS Chr5 23468094 G-C Homo INTERGENIC
SBS Chr5 29337856 C-T Hetero INTRON
SBS Chr6 1849781 T-A Homo INTERGENIC
SBS Chr7 13834507 G-A Hetero INTERGENIC
SBS Chr8 11011515 A-T Homo INTERGENIC
SBS Chr8 17233599 C-A Homo INTERGENIC
SBS Chr8 20923379 A-T Homo INTRON
SBS Chr8 27493853 G-T Hetero INTERGENIC
SBS Chr9 9831859 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g059600
SBS Chr10 2116716 C-G Hetero INTERGENIC
SBS Chr10 3007252 T-C Hetero INTERGENIC
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr10 13789792 G-A Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr12 11876108 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3259586 3259589 3 OsKitaake11g045100
Deletion Chr7 6483470 6483471 1
Deletion Chr3 12668642 12668661 19
Deletion Chr2 16826656 16826664 8
Deletion Chr5 16885440 16885441 1
Deletion Chr7 17334027 17334033 6
Deletion Chr5 17919922 17919929 7
Deletion Chr6 19404340 19404343 3
Deletion Chr12 19823640 19823641 1
Deletion Chr8 20813774 20813779 5
Deletion Chr9 22052548 22052556 8
Deletion Chr11 23333932 23333937 5
Deletion Chr6 26469460 26469468 8
Deletion Chr2 26638001 26691000 52999 6
Deletion Chr3 32174820 32174824 4 OsKitaake03g341000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7564703 7564706 2
Insertion Chr5 19638679 19638681 1
Insertion Chr7 4036415 4036418 2
Insertion Chr11 7413998 7414001 2
Insertion Chr12 574573 574577 3
Insertion Chr2 18964426 18964428 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 27257844 27357339
Inversion Chr8 27257851 27357349
Inversion Chr4 32223205 32370599 2
Inversion Chr4 32223207 32370611 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 20821605 Chr8 17493469 OsKitaake12g163100
Translocation Chr12 20821634 Chr8 17491890 OsKitaake12g163100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12514420	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	23299207	A-C	Hetero	UTR_5_PRIME
SBS	Chr1	24629801	C-T	Hetero	INTERGENIC
SBS	Chr1	34278487	T-G	Hetero	INTERGENIC
SBS	Chr1	37635243	C-T	Hetero	INTERGENIC
SBS	Chr2	1356240	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	14943537	T-C	Hetero	INTERGENIC
SBS	Chr2	18989112	T-A	Homo	INTRON
SBS	Chr2	20568184	G-T	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	29630927	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34423663	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	2871526	G-A	Hetero	INTERGENIC
SBS	Chr3	9593683	C-A	Hetero	INTERGENIC
SBS	Chr3	31075501	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	13718964	C-T	Hetero	INTERGENIC
SBS	Chr5	19202646	A-G	Homo	INTERGENIC
SBS	Chr5	23468094	G-C	Homo	INTERGENIC
SBS	Chr5	29337856	C-T	Hetero	INTRON
SBS	Chr6	1849781	T-A	Homo	INTERGENIC
SBS	Chr7	13834507	G-A	Hetero	INTERGENIC
SBS	Chr8	11011515	A-T	Homo	INTERGENIC
SBS	Chr8	17233599	C-A	Homo	INTERGENIC
SBS	Chr8	20923379	A-T	Homo	INTRON
SBS	Chr8	27493853	G-T	Hetero	INTERGENIC
SBS	Chr9	9831859	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g059600
SBS	Chr10	2116716	C-G	Hetero	INTERGENIC
SBS	Chr10	3007252	T-C	Hetero	INTERGENIC
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr10	13789792	G-A	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr12	11876108	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3259586	3259589	3	OsKitaake11g045100
Deletion	Chr7	6483470	6483471	1
Deletion	Chr3	12668642	12668661	19
Deletion	Chr2	16826656	16826664	8
Deletion	Chr5	16885440	16885441	1
Deletion	Chr7	17334027	17334033	6
Deletion	Chr5	17919922	17919929	7
Deletion	Chr6	19404340	19404343	3
Deletion	Chr12	19823640	19823641	1
Deletion	Chr8	20813774	20813779	5
Deletion	Chr9	22052548	22052556	8
Deletion	Chr11	23333932	23333937	5
Deletion	Chr6	26469460	26469468	8
Deletion	Chr2	26638001	26691000	52999	6
Deletion	Chr3	32174820	32174824	4	OsKitaake03g341000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	27257844	27357339
Inversion	Chr8	27257851	27357349
Inversion	Chr4	32223205	32370599	2
Inversion	Chr4	32223207	32370611	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes