Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-107 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-107 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24904359 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 26695467 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29486119 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29507658 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 30510275 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 38176621 | A-G | Homo | INTRON | |
| SBS | Chr1 | 39622064 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 42093626 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11938763 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19864182 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 23262361 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 30441171 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21480965 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4730582 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24356153 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 25618815 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 30043668 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2942404 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6546430 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8649925 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 14970589 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1175668 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22017672 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20287368 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20770508 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10832600 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6502998 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3098945 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4380952 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4380953 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 3051075 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10195916 | C-G | Hetero | INTRON | |
| SBS | Chr12 | 22763141 | T-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 3055001 | 3096000 | 40999 | 5 |
| Deletion | Chr8 | 5578001 | 5590000 | 11999 | OsKitaake08g061000 |
| Deletion | Chr9 | 11087937 | 11087938 | 1 | |
| Deletion | Chr9 | 16359853 | 16359854 | 1 | |
| Deletion | Chr11 | 19460998 | 19461005 | 7 | |
| Deletion | Chr6 | 19563586 | 19563587 | 1 | |
| Deletion | Chr11 | 25117579 | 25117589 | 10 | |
| Deletion | Chr5 | 30211755 | 30211756 | 1 | |
| Deletion | Chr1 | 33925215 | 33925216 | 1 | OsKitaake01g348800 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 21867251 | 21867254 | 2 | |
| Insertion | Chr10 | 3655808 | 3655810 | 1 | OsKitaake10g027300  |
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 3096282 | 3390689 | |
| Inversion | Chr3 | 5000171 | 5432171 | |
| Inversion | Chr3 | 5000184 | 5432188 | |
| Inversion | Chr8 | 5578174 | 5783579 | |
| Inversion | Chr8 | 5590146 | 5788961 | OsKitaake08g063400 |
| Inversion | Chr1 | 20686163 | 20813105 | |
| Inversion | Chr1 | 20686168 | 20813109 | |
| Inversion | Chr8 | 24707383 | 25073157 | |
| Inversion | Chr8 | 24707386 | 25073161 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 1923163 | Chr1 | 29501772 | OsKitaake06g023900 |
| Translocation | Chr6 | 1923166 | Chr1 | 29485909 | OsKitaake06g023900 |
| Translocation | Chr8 | 5788716 | Chr6 | 24342739 | OsKitaake08g063400 |
| Translocation | Chr8 | 5788927 | Chr6 | 24342742 | OsKitaake08g063400 |