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Mutant Information

Mutant Name	FN-108 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-108 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3677428 A-G Hetero INTERGENIC
SBS Chr1 7729098 G-A Homo INTRON
SBS Chr1 9994603 C-T Hetero INTERGENIC
SBS Chr2 28674895 C-T Hetero INTERGENIC
SBS Chr3 19063808 C-A Hetero INTERGENIC
SBS Chr4 7014254 C-A Homo INTERGENIC
SBS Chr4 20178353 G-A Homo INTRON
SBS Chr4 28022610 C-A Hetero INTERGENIC
SBS Chr4 30088000 T-A Homo INTERGENIC
SBS Chr4 30088001 C-A Homo INTERGENIC
SBS Chr5 7127318 A-T Hetero INTERGENIC
SBS Chr5 14132661 C-T Hetero INTERGENIC
SBS Chr5 17776516 T-A Hetero INTERGENIC
SBS Chr6 978249 G-A Hetero INTERGENIC
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 1960554 T-C Hetero INTRON
SBS Chr7 16077583 T-C Hetero INTERGENIC
SBS Chr7 20389021 A-G Hetero INTERGENIC
SBS Chr8 15594866 C-T Homo INTERGENIC
SBS Chr8 22357771 T-C Hetero INTERGENIC
SBS Chr9 7088203 C-T Hetero INTERGENIC
SBS Chr9 21020263 C-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 77824 77828 4
Deletion Chr12 4549771 4549772 1 OsKitaake12g060500
Deletion Chr5 6801001 7103000 301999 28
Deletion Chr2 15143943 15143948 5
Deletion Chr10 15414157 15414158 1
Deletion Chr12 18414776 18414781 5
Deletion Chr10 23539072 23539074 2
Deletion Chr4 23540812 23540814 2 OsKitaake04g147300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 22626305 22626308 2
Insertion Chr6 13903752 13903754 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3677428	A-G	Hetero	INTERGENIC
SBS	Chr1	7729098	G-A	Homo	INTRON
SBS	Chr1	9994603	C-T	Hetero	INTERGENIC
SBS	Chr2	28674895	C-T	Hetero	INTERGENIC
SBS	Chr3	19063808	C-A	Hetero	INTERGENIC
SBS	Chr4	7014254	C-A	Homo	INTERGENIC
SBS	Chr4	20178353	G-A	Homo	INTRON
SBS	Chr4	28022610	C-A	Hetero	INTERGENIC
SBS	Chr4	30088000	T-A	Homo	INTERGENIC
SBS	Chr4	30088001	C-A	Homo	INTERGENIC
SBS	Chr5	7127318	A-T	Hetero	INTERGENIC
SBS	Chr5	14132661	C-T	Hetero	INTERGENIC
SBS	Chr5	17776516	T-A	Hetero	INTERGENIC
SBS	Chr6	978249	G-A	Hetero	INTERGENIC
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	1960554	T-C	Hetero	INTRON
SBS	Chr7	16077583	T-C	Hetero	INTERGENIC
SBS	Chr7	20389021	A-G	Hetero	INTERGENIC
SBS	Chr8	15594866	C-T	Homo	INTERGENIC
SBS	Chr8	22357771	T-C	Hetero	INTERGENIC
SBS	Chr9	7088203	C-T	Hetero	INTERGENIC
SBS	Chr9	21020263	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	77824	77828	4
Deletion	Chr12	4549771	4549772	1	OsKitaake12g060500
Deletion	Chr5	6801001	7103000	301999	28
Deletion	Chr2	15143943	15143948	5
Deletion	Chr10	15414157	15414158	1
Deletion	Chr12	18414776	18414781	5
Deletion	Chr10	23539072	23539074	2
Deletion	Chr4	23540812	23540814	2	OsKitaake04g147300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes