Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-109 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-109 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23680953 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g227300 |
| SBS | Chr1 | 26787977 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41666618 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 41666621 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42005943 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 9577816 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10831940 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20544777 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 10125602 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21408703 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 34639042 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 11984444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11984445 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24464779 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 13646989 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 20020211 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2667888 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 2727548 | G-A | Homo | INTRON | |
| SBS | Chr12 | 7169799 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1083001 | 1220000 | 136999 | 15 |
| Deletion | Chr4 | 2456151 | 2456152 | 1 | |
| Deletion | Chr10 | 3559333 | 3559339 | 6 | |
| Deletion | Chr2 | 6069528 | 6069529 | 1 | |
| Deletion | Chr6 | 6316001 | 6408000 | 91999 | 15 |
| Deletion | Chr8 | 9227330 | 9227332 | 2 | |
| Deletion | Chr5 | 11096505 | 11096720 | 215 | OsKitaake05g094700 |
| Deletion | Chr4 | 15609099 | 15609111 | 12 | |
| Deletion | Chr8 | 17942429 | 17942739 | 310 | |
| Deletion | Chr4 | 19584625 | 19584635 | 10 | |
| Deletion | Chr4 | 22072497 | 22072501 | 4 | |
| Deletion | Chr3 | 22088260 | 22088266 | 6 | |
| Deletion | Chr5 | 22935409 | 22935415 | 6 | |
| Deletion | Chr11 | 27485061 | 27485064 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 29470751 | 29470754 | 2 | |
| Insertion | Chr8 | 8960664 | 8960673 | 8 | |
| Insertion | Chr8 | 13474384 | 13474391 | 6 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 5865149 | 6555347 | OsKitaake06g077100 |
| Inversion | Chr6 | 6407952 | 6555417 | OsKitaake06g083900 |
| Inversion | Chr5 | 9333829 | 9481967 | OsKitaake05g087202 |
| Inversion | Chr5 | 9333842 | 9481967 | OsKitaake05g087202 |
| Inversion | Chr4 | 11963650 | 12862966 | OsKitaake04g061200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 849273 | Chr4 | 22644446 | OsKitaake04g134500 |
| Translocation | Chr11 | 1220217 | Chr4 | 22644457 | OsKitaake04g134500 |
| Translocation | Chr6 | 6975056 | Chr4 | 15642135 | |
| Translocation | Chr6 | 6983791 | Chr4 | 15642137 | OsKitaake06g090500 |