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Mutant Information

Mutant Name	FN-11 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-11 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31604801 T-A Homo INTERGENIC
SBS Chr3 9528076 T-A Hetero INTERGENIC
SBS Chr3 9705644 C-T Hetero INTERGENIC
SBS Chr3 16847546 T-A Homo INTERGENIC
SBS Chr3 23095143 A-G Homo INTERGENIC
SBS Chr4 17772767 G-A Homo INTERGENIC
SBS Chr4 18156903 G-A Hetero INTERGENIC
SBS Chr5 10802807 G-T Hetero INTERGENIC
SBS Chr5 11554032 A-G Hetero INTERGENIC
SBS Chr5 12706036 G-A Hetero INTERGENIC
SBS Chr5 21915018 C-T Homo INTERGENIC
SBS Chr8 11081323 G-A Hetero INTERGENIC
SBS Chr8 14398694 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g113000
SBS Chr8 25461956 G-T Hetero INTERGENIC
SBS Chr8 28099786 G-A Hetero INTERGENIC
SBS Chr8 29125500 A-G Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 2182936 A-G Homo INTERGENIC
SBS Chr10 12972813 T-C Hetero INTERGENIC
SBS Chr10 12972817 T-A Hetero INTERGENIC
SBS Chr11 12077108 G-A Hetero INTRON
SBS Chr11 15904869 C-A Hetero INTERGENIC
SBS Chr11 21062798 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 21062799 A-T Hetero STOP_GAINED OsKitaake11g167200
SBS Chr12 19521803 G-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 288011 288014 3
Deletion Chr7 1990322 1990327 5
Deletion Chr8 2322363 2322365 2
Deletion Chr5 2370911 2370912 1
Deletion Chr1 4588530 4588538 8
Deletion Chr8 4735928 4736100 172
Deletion Chr2 6492628 6492635 7
Deletion Chr2 6794178 6794184 6
Deletion Chr12 7526739 7526755 16
Deletion Chr12 7938147 7938148 1
Deletion Chr3 8328151 8328157 6
Deletion Chr10 8940564 8940570 6
Deletion Chr10 11197037 11197038 1
Deletion Chr10 11749831 11749848 17
Deletion Chr4 16360241 16360245 4
Deletion Chr6 17830498 17830504 6
Deletion Chr7 19089108 19089109 1
Deletion Chr1 21116001 21197000 80999 3
Deletion Chr2 22115698 22115703 5
Deletion Chr4 28234001 28441000 206999 23
Deletion Chr8 28807853 28807861 8
Deletion Chr3 31687221 31687222 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 28150704 28150707 2
Insertion Chr12 23958505 23958508 2
Insertion Chr3 8671974 8671978 3
Insertion Chr8 25099023 25099025 1 OsKitaake08g195100

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 15554243 16004017 OsKitaake03g204600
Inversion Chr3 16004025 16846545 OsKitaake03g204600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1254066 Chr1 23227043 OsKitaake08g016100
Translocation Chr8 1254077 Chr1 23228788 2
Translocation Chr8 19143686 Chr1 623017
Translocation Chr11 28987496 Chr1 622621 OsKitaake11g237300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31604801	T-A	Homo	INTERGENIC
SBS	Chr3	9528076	T-A	Hetero	INTERGENIC
SBS	Chr3	9705644	C-T	Hetero	INTERGENIC
SBS	Chr3	16847546	T-A	Homo	INTERGENIC
SBS	Chr3	23095143	A-G	Homo	INTERGENIC
SBS	Chr4	17772767	G-A	Homo	INTERGENIC
SBS	Chr4	18156903	G-A	Hetero	INTERGENIC
SBS	Chr5	10802807	G-T	Hetero	INTERGENIC
SBS	Chr5	11554032	A-G	Hetero	INTERGENIC
SBS	Chr5	12706036	G-A	Hetero	INTERGENIC
SBS	Chr5	21915018	C-T	Homo	INTERGENIC
SBS	Chr8	11081323	G-A	Hetero	INTERGENIC
SBS	Chr8	14398694	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g113000
SBS	Chr8	25461956	G-T	Hetero	INTERGENIC
SBS	Chr8	28099786	G-A	Hetero	INTERGENIC
SBS	Chr8	29125500	A-G	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Homo	INTERGENIC
SBS	Chr10	12972813	T-C	Hetero	INTERGENIC
SBS	Chr10	12972817	T-A	Hetero	INTERGENIC
SBS	Chr11	12077108	G-A	Hetero	INTRON
SBS	Chr11	15904869	C-A	Hetero	INTERGENIC
SBS	Chr11	21062798	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	21062799	A-T	Hetero	STOP_GAINED	OsKitaake11g167200
SBS	Chr12	19521803	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	288011	288014	3
Deletion	Chr7	1990322	1990327	5
Deletion	Chr8	2322363	2322365	2
Deletion	Chr5	2370911	2370912	1
Deletion	Chr1	4588530	4588538	8
Deletion	Chr8	4735928	4736100	172
Deletion	Chr2	6492628	6492635	7
Deletion	Chr2	6794178	6794184	6
Deletion	Chr12	7526739	7526755	16
Deletion	Chr12	7938147	7938148	1
Deletion	Chr3	8328151	8328157	6
Deletion	Chr10	8940564	8940570	6
Deletion	Chr10	11197037	11197038	1
Deletion	Chr10	11749831	11749848	17
Deletion	Chr4	16360241	16360245	4
Deletion	Chr6	17830498	17830504	6
Deletion	Chr7	19089108	19089109	1
Deletion	Chr1	21116001	21197000	80999	3
Deletion	Chr2	22115698	22115703	5
Deletion	Chr4	28234001	28441000	206999	23
Deletion	Chr8	28807853	28807861	8
Deletion	Chr3	31687221	31687222	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	15554243	16004017	OsKitaake03g204600
Inversion	Chr3	16004025	16846545	OsKitaake03g204600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes